View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7497_low_3 (Length: 336)
Name: NF7497_low_3
Description: NF7497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7497_low_3 |
 | |
|
| [»] chr7 (26 HSPs) |
| |
|
| [»] chr4 (4 HSPs) |
| |
|
| [»] chr2 (10 HSPs) |
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|
Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 26)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 19 - 336
Target Start/End: Original strand, 10493856 - 10494173
Alignment:
| Q |
19 |
gtaaaacattttgagaacannnnnnnaaaaccc-ggttagtatgcaattgctattttagctcgacaaatgaatgatgggaatttgnnnnnnnnnagatgc |
117 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10493856 |
gtaaaacattttgagaacatttttttaaaaccccggttagtatgcaattgctattttagctcgacaaatgaatgatgggaatttgtttttttt-agatgc |
10493954 |
T |
|
| Q |
118 |
taagaggttagttggcaggaagtttagtgatccggttgttcaaaatgatataatgttgtggccattcaaggttacttctggtgttaatgacaagcctatg |
217 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||| |||||| |
|
|
| T |
10493955 |
taagaggttaattggcaggaagtttagtgatccggttgttcaaaacgatataatgttgtggccattcaaggttacttcaggtgtcaatgacaaacctatg |
10494054 |
T |
|
| Q |
218 |
attacggttaagtacaagggtcaagataagcacttttgtgctgaggaaatatcttctatggtccttacaaagatgcgagaggttgcagaggcatatctgg |
317 |
Q |
| |
|
||||| | |||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
10494055 |
attaccgctaagtacaagggtcaagagaagcacttttgtgccgaggaaatatcatctatggtccttataaagatgcgagaggttgcagaggcatatttgg |
10494154 |
T |
|
| Q |
318 |
ggtcacctgtcaagaatgc |
336 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
10494155 |
ggtcaccagtcaagaatgc |
10494173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 112 - 336
Target Start/End: Original strand, 13333031 - 13333255
Alignment:
| Q |
112 |
agatgctaagaggttagttggcaggaagtttagtgatccggttgttcaaaatgatataatgttgtggccattcaaggttacttctggtgttaatgacaag |
211 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
13333031 |
agatgctaagaggttaattggtaggaagtttagtgatccggttgttcaaaatgatataatgttgtggccattcaaggttacttctggtgtcaacgacaag |
13333130 |
T |
|
| Q |
212 |
cctatgattacggttaagtacaagggtcaagataagcacttttgtgctgaggaaatatcttctatggtccttacaaagatgcgagaggttgcagaggcat |
311 |
Q |
| |
|
||||||||||| | ||||| |||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13333131 |
cctatgattaccgctaagtgcaagggtcaagagaagcacttttgtgccgaggaaatatcatctatggtccttacaaagatgcgagaggttgcagaggcat |
13333230 |
T |
|
| Q |
312 |
atctggggtcacctgtcaagaatgc |
336 |
Q |
| |
|
|| |||||||||| ||||||||||| |
|
|
| T |
13333231 |
atatggggtcaccagtcaagaatgc |
13333255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 112 - 336
Target Start/End: Complemental strand, 8668012 - 8667788
Alignment:
| Q |
112 |
agatgctaagaggttagttggcaggaagtttagtgatccggttgttcaaaatgatataatgttgtggccattcaaggttacttctggtgttaatgacaag |
211 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||| || |||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8668012 |
agatgctaagaggttaattggtaggaagtttagtgaccccgttgttcaaagagatatattgttgtggccattcaaggttatttctggtgttaatgacaaa |
8667913 |
T |
|
| Q |
212 |
cctatgattacggttaagtacaagggtcaagataagcacttttgtgctgaggaaatatcttctatggtccttacaaagatgcgagaggttgcagaggcat |
311 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
8667912 |
cctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatggtgcttacaaagatgcgagaggttgcggaggcat |
8667813 |
T |
|
| Q |
312 |
atctggggtcacctgtcaagaatgc |
336 |
Q |
| |
|
|||||||||| || ||||||||||| |
|
|
| T |
8667812 |
atctggggtcgccggtcaagaatgc |
8667788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 124 - 336
Target Start/End: Original strand, 8671217 - 8671429
Alignment:
| Q |
124 |
gttagttggcaggaagtttagtgatccggttgttcaaaatgatataatgttgtggccattcaaggttacttctggtgttaatgacaagcctatgattacg |
223 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
8671217 |
gttaattggtaggaagtttagtgatccggttgttcaaagagatatattgttgtggccattcaaggttatttctggtgttaatgacaaacctatgattact |
8671316 |
T |
|
| Q |
224 |
gttaagtacaagggtcaagataagcacttttgtgctgaggaaatatcttctatggtccttacaaagatgcgagaggttgcagaggcatatctggggtcac |
323 |
Q |
| |
|
|| |||||| | |||| ||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
8671317 |
gtcaagtacgaaggtctagagaagcaattttgtgctgaggaaatatcttctatggtgcttacaaagatgcgagaggttgcggaggcatatctggagtcac |
8671416 |
T |
|
| Q |
324 |
ctgtcaagaatgc |
336 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
8671417 |
cggtcaagaatgc |
8671429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 112 - 335
Target Start/End: Complemental strand, 8655043 - 8654820
Alignment:
| Q |
112 |
agatgctaagaggttagttggcaggaagtttagtgatccggttgttcaaaatgatataatgttgtggccattcaaggttacttctggtgttaatgacaag |
211 |
Q |
| |
|
|||||||||||||||| |||| ||||||| ||||||||| |||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8655043 |
agatgctaagaggttaattggtaggaagtatagtgatcctattgttcaaaaggatatcatgttgtggccattcatggttacttctggtgttaatgacaaa |
8654944 |
T |
|
| Q |
212 |
cctatgattacggttaagtacaagggtcaagataagcacttttgtgctgaggaaatatcttctatggtccttacaaagatgcgagaggttgcagaggcat |
311 |
Q |
| |
|
|| |||||||| ||||||||||| |||||||| ||||| |||||||||||||||||||| ||| ||| |||||||||||||||||| |||||||||||| |
|
|
| T |
8654943 |
cccatgattactgttaagtacaaaggtcaagagaagcaattttgtgctgaggaaatatcatctgcggttcttacaaagatgcgagagattgcagaggcat |
8654844 |
T |
|
| Q |
312 |
atctggggtcacctgtcaagaatg |
335 |
Q |
| |
|
| || || ||||| ||||| |||| |
|
|
| T |
8654843 |
accttggatcacccgtcaaaaatg |
8654820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 112 - 276
Target Start/End: Original strand, 8585281 - 8585445
Alignment:
| Q |
112 |
agatgctaagaggttagttggcaggaagtttagtgatccggttgttcaaaatgatataatgttgtggccattcaaggttacttctggtgttaatgacaag |
211 |
Q |
| |
|
|||||| ||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8585281 |
agatgccaagaggttaattggtaggaagtttagtgatcccgttgttcaaaatgatataatgttgtggccattcaaggttatctctggtgttaatgacaaa |
8585380 |
T |
|
| Q |
212 |
cctatgattacggttaagtacaagggtcaagataagcacttttgtgctgaggaaatatcttctat |
276 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||| || | ||||||||||||||||| ||||| |
|
|
| T |
8585381 |
cctatgattactgttaagtacaagggtcaagaaaagaacctatgtgctgaggaaatatcatctat |
8585445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 112 - 276
Target Start/End: Complemental strand, 8629125 - 8628961
Alignment:
| Q |
112 |
agatgctaagaggttagttggcaggaagtttagtgatccggttgttcaaaatgatataatgttgtggccattcaaggttacttctggtgttaatgacaag |
211 |
Q |
| |
|
|||||| ||||||||| |||| ||||||||||||||||| ||||||||||| ||||| ||||| |||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
8629125 |
agatgccaagaggttaattggtaggaagtttagtgatcctgttgttcaaaaggatatcatgttctggccattcaaggttatttctggtcttaatgacaag |
8629026 |
T |
|
| Q |
212 |
cctatgattacggttaagtacaagggtcaagataagcacttttgtgctgaggaaatatcttctat |
276 |
Q |
| |
|
||||||||| | |||||||||||||||||||| ||| || | ||||||||||||||||| ||||| |
|
|
| T |
8629025 |
cctatgattgctgttaagtacaagggtcaagagaagaacctatgtgctgaggaaatatcatctat |
8628961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 112 - 336
Target Start/End: Complemental strand, 8659956 - 8659732
Alignment:
| Q |
112 |
agatgctaagaggttagttggcaggaagtttagtgatccggttgttcaaaatgatataatgttgtggccattcaaggttacttctggtgttaatgacaag |
211 |
Q |
| |
|
|||||| ||||| ||| |||| ||||||||||||||| | ||||||||||| || || |||||||||||||||||||||| ||||||| || ||||| |
|
|
| T |
8659956 |
agatgcaaagagattaattggtaggaagtttagtgattcagttgttcaaaaagacatgatgttgtggccattcaaggttatcgctggtgtgaacgacaaa |
8659857 |
T |
|
| Q |
212 |
cctatgattacggttaagtacaagggtcaagataagcacttttgtgctgaggaaatatcttctatggtccttacaaagatgcgagaggttgcagaggcat |
311 |
Q |
| |
|
| ||||||| ||| ||||||||||||| || |||||||||||||| ||||||||||| |||||||| |||||||| |||||||| ||||||||| ||| |
|
|
| T |
8659856 |
ctcatgattaatgttcagtacaagggtcaggagaagcacttttgtgcggaggaaatatcatctatggtacttacaaaaatgcgagaagttgcagagacat |
8659757 |
T |
|
| Q |
312 |
atctggggtcacctgtcaagaatgc |
336 |
Q |
| |
|
|||| ||||||||| |||||||| |
|
|
| T |
8659756 |
atctaatgtcacctgtgaagaatgc |
8659732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 112 - 315
Target Start/End: Complemental strand, 1302057 - 1301854
Alignment:
| Q |
112 |
agatgctaagaggttagttggcaggaagtttagtgatccggttgttcaaaatgatataatgttgtggccattcaaggttacttctggtgttaatgacaag |
211 |
Q |
| |
|
|||||||||||| ||| |||| ||||||||||||||| | ||||||||||| || || |||||||||||||||||||| | | ||||| |||||||| |
|
|
| T |
1302057 |
agatgctaagagattaattggtaggaagtttagtgattcagttgttcaaaaagacatgatgttgtggccattcaaggtcatcgccggtgtgaatgacaaa |
1301958 |
T |
|
| Q |
212 |
cctatgattacggttaagtacaagggtcaagataagcacttttgtgctgaggaaatatcttctatggtccttacaaagatgcgagaggttgcagaggcat |
311 |
Q |
| |
|
|| ||||| ||||||||||||||||| || ||||||||||| | ||||||||||| |||||||||||||| ||||||||||| |||||||| ||| |
|
|
| T |
1301957 |
cccgtgattgttgttaagtacaagggtcaggagaagcacttttgcgtggaggaaatatcatctatggtccttacgaagatgcgagaaattgcagagacat |
1301858 |
T |
|
| Q |
312 |
atct |
315 |
Q |
| |
|
|||| |
|
|
| T |
1301857 |
atct |
1301854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 112 - 294
Target Start/End: Complemental strand, 3147865 - 3147683
Alignment:
| Q |
112 |
agatgctaagaggttagttggcaggaagtttagtgatccggttgttcaaaatgatataatgttgtggccattcaaggttacttctggtgttaatgacaag |
211 |
Q |
| |
|
|||||| ||||||||| |||| ||||||||| ||||| | ||||||||||||||||| |||||||||||||||||||| | || || || |||||||| |
|
|
| T |
3147865 |
agatgcaaagaggttaattggtaggaagtttggtgattctgttgttcaaaatgatatgatgttgtggccattcaaggtcatttgcggagtgaatgacaaa |
3147766 |
T |
|
| Q |
212 |
cctatgattacggttaagtacaagggtcaagataagcacttttgtgctgaggaaatatcttctatggtccttacaaagatgcg |
294 |
Q |
| |
|
|| |||||| ||||||||| |||||| || || |||||| | |||||||| ||||| || |||||||| || ||||||||||| |
|
|
| T |
3147765 |
cccatgatttcggttaagtgcaagggacaggagaagcacctatgtgctgaagaaatctcatctatggttctaacaaagatgcg |
3147683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 112 - 307
Target Start/End: Complemental strand, 8647467 - 8647275
Alignment:
| Q |
112 |
agatgctaagaggttagttggcaggaagtttagtgatccggttgttcaaaatgatataatgttgtggccattcaaggttacttctggtgttaatgacaag |
211 |
Q |
| |
|
|||||||||||||||| | || ||||||||| |||| | |||||||| ||||||| | |||||||||||||||||| | | || || |||||||| |
|
|
| T |
8647467 |
agatgctaagaggttaatcggtaggaagttttttgattctgttgttcagaatgataagaagttgtggccattcaaggtcatt---ggggtgaatgacaaa |
8647371 |
T |
|
| Q |
212 |
cctatgattacggttaagtacaagggtcaagataagcacttttgtgctgaggaaatatcttctatggtccttacaaagatgcgagaggttgcagag |
307 |
Q |
| |
|
|| ||||||| ||||| ||||||||| |||| |||| | |||||||||||||||||| || ||| |||| |||||||||||||||||||||||| |
|
|
| T |
8647370 |
cccatgattattgttaaatacaagggtgaagagaagcgttattgtgctgaggaaatatcatcgatgatcctcacaaagatgcgagaggttgcagag |
8647275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 112 - 303
Target Start/End: Complemental strand, 6790105 - 6789914
Alignment:
| Q |
112 |
agatgctaagaggttagttggcaggaagtttagtgatccggttgttcaaaatgatataatgttgtggccattcaaggttacttctggtgttaatgacaag |
211 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||| | ||||||||||||||||| ||||| |||||||||||||| | | |||| || ||||||||| |
|
|
| T |
6790105 |
agatgctaagaggttaattggtaggaagtttagtgattctgttgttcaaaatgatatgatgttttggccattcaaggtcattgctggcgtcaatgacaag |
6790006 |
T |
|
| Q |
212 |
cctatgattacggttaagtacaagggtcaagataagcacttttgtgctgaggaaatatcttctatggtccttacaaagatgcgagaggttgc |
303 |
Q |
| |
|
|| |||||| ||| |||| |||||| | || ||||| | |||| ||||||| | || |||||| |||| || |||||||| ||| |||| |
|
|
| T |
6790005 |
cccatgattgttgttgagtataagggtgaggagaagcaactatgtgttgaggaagtttcgtctatgatcctcaccaagatgcgggagattgc |
6789914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 112 - 315
Target Start/End: Complemental strand, 17268532 - 17268329
Alignment:
| Q |
112 |
agatgctaagaggttagttggcaggaagtttagtgatccggttgttcaaaatgatataatgttgtggccattcaaggttacttctggtgttaatgacaag |
211 |
Q |
| |
|
|||||||||||| || |||| ||||||||||||||||| || || ||||| |||||||||| ||||||||||||||| | | | | | | |||||||| |
|
|
| T |
17268532 |
agatgctaagagactaattggtaggaagtttagtgatcctgtggtccaaaaagatataatgtcgtggccattcaaggtcattgcggatatgaatgacaaa |
17268433 |
T |
|
| Q |
212 |
cctatgattacggttaagtacaagggtcaagataagcacttttgtgctgaggaaatatcttctatggtccttacaaagatgcgagaggttgcagaggcat |
311 |
Q |
| |
|
|| |||||| | | ||||||||||| | || || ||||||||||| |||||||| || |||||||| || ||||||||||| ||| |||| |||| || |
|
|
| T |
17268432 |
ccaatgatttccctcaagtacaagggacgggagaaacacttttgtgcagaggaaatttcgtctatggtactcacaaagatgcgggagattgctgaggaat |
17268333 |
T |
|
| Q |
312 |
atct |
315 |
Q |
| |
|
|||| |
|
|
| T |
17268332 |
atct |
17268329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 152 - 307
Target Start/End: Original strand, 8640164 - 8640316
Alignment:
| Q |
152 |
gttgttcaaaatgatataatgttgtggccattcaaggttacttctggtgttaatgacaagcctatgattacggttaagtacaagggtcaagataagcact |
251 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||| | | || || |||||||| || | ||||| ||||| ||||||||| |||| |||| | |
|
|
| T |
8640164 |
gttgttcaaaatgatatgaagttgtggccattcaaggtcatt---ggggtgaatgacaaacccacgattattgttaaatacaagggtgaagagaagcgtt |
8640260 |
T |
|
| Q |
252 |
tttgtgctgaggaaatatcttctatggtccttacaaagatgcgagaggttgcagag |
307 |
Q |
| |
|
||||||| ||||||||||| |||||| ||||| | ||||||||||||||||||||| |
|
|
| T |
8640261 |
tttgtgccgaggaaatatcatctatgatcctttcgaagatgcgagaggttgcagag |
8640316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 112 - 336
Target Start/End: Complemental strand, 8546225 - 8546001
Alignment:
| Q |
112 |
agatgctaagaggttagttggcaggaagtttagtgatccggttgttcaaaatgatataatgttgtggccattcaaggttacttctggtgttaatgacaag |
211 |
Q |
| |
|
|||||| ||||||||| |||| ||||| | ||||||| | ||||||| |||||| || |||||||||| || ||||| | ||| |||||||||||||| |
|
|
| T |
8546225 |
agatgcaaagaggttaattggaaggaaatatagtgattcctttgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaaa |
8546126 |
T |
|
| Q |
212 |
cctatgattacggttaagtacaagggtcaagataagcacttttgtgctgaggaaatatcttctatggtccttacaaagatgcgagaggttgcagaggcat |
311 |
Q |
| |
|
|| | ||| || || ||||||||| | || ||||||||| |||||| |||||||| ||| || |||| || ||||||||||| |||||||||||| |
|
|
| T |
8546125 |
ccgacaattcttgtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatcatctgtgatcctctcacagatgcgagagattgcagaggcat |
8546026 |
T |
|
| Q |
312 |
atctggggtcacctgtcaagaatgc |
336 |
Q |
| |
|
| ||| ||||||||| |||||||| |
|
|
| T |
8546025 |
ttttggagtcacctgttaagaatgc |
8546001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 112 - 315
Target Start/End: Complemental strand, 17260834 - 17260631
Alignment:
| Q |
112 |
agatgctaagaggttagttggcaggaagtttagtgatccggttgttcaaaatgatataatgttgtggccattcaaggttacttctggtgttaatgacaag |
211 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||| || || ||||| |||||||||| ||||||||||||||| | | | | | | |||||||| |
|
|
| T |
17260834 |
agatgctaagagactagttggtaggaagtttagtgatcctgtggtccaaaaagatataatgtcgtggccattcaaggtcattgcggatatgaatgacaaa |
17260735 |
T |
|
| Q |
212 |
cctatgattacggttaagtacaagggtcaagataagcacttttgtgctgaggaaatatcttctatggtccttacaaagatgcgagaggttgcagaggcat |
311 |
Q |
| |
|
|| |||||| | | ||||||||||| | || || ||||||||||| |||||||| || |||||||| ||| |||||||| ||| |||| |||| || |
|
|
| T |
17260734 |
ccaatgatttccctcaagtacaagggacgggagaaacacttttgtgcagaggaaatctcgtctatggtacttgtgaagatgcgggagattgctgaggtat |
17260635 |
T |
|
| Q |
312 |
atct |
315 |
Q |
| |
|
|||| |
|
|
| T |
17260634 |
atct |
17260631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 112 - 313
Target Start/End: Original strand, 27830450 - 27830651
Alignment:
| Q |
112 |
agatgctaagaggttagttggcaggaagtttagtgatccggttgttcaaaatgatataatgttgtggccattcaaggttacttctggtgttaatgacaag |
211 |
Q |
| |
|
|||||||||||||||| |||| |||||||| || ||| ||||||||||| ||||||| ||||||| |||||| || | | ||| ||| || |||| |
|
|
| T |
27830450 |
agatgctaagaggttaattggtaggaagttcagcgatgatgttgttcaaaaagatataaacttgtggctattcaaagtcattactgatgtaaacaacaaa |
27830549 |
T |
|
| Q |
212 |
cctatgattacggttaagtacaagggtcaagataagcacttttgtgctgaggaaatatcttctatggtccttacaaagatgcgagaggttgcagaggcat |
311 |
Q |
| |
|
|| ||| || |||||||||||| |||| || || ||||| ||||| |||||||| || || |||||||||||||||||||||||| | || ||||||| |
|
|
| T |
27830550 |
cccatgtttgttgttaagtacaagagtcaggagaaacacttatgtgcggaggaaatttcatcaatggtccttacaaagatgcgagagatcgcggaggcat |
27830649 |
T |
|
| Q |
312 |
at |
313 |
Q |
| |
|
|| |
|
|
| T |
27830650 |
at |
27830651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 336
Target Start/End: Original strand, 7877308 - 7877532
Alignment:
| Q |
112 |
agatgctaagaggttagttggcaggaagtttagtgatccggttgttcaaaatgatataatgttgtggccattcaaggttacttctggtgttaatgacaag |
211 |
Q |
| |
|
|||||| |||||||| |||| ||||| | ||| ||| | ||| |||| |||||||| ||||||||||||| |||||| | ||||| | |||||||| |
|
|
| T |
7877308 |
agatgcaaagaggttgattggaaggaaatatagcgattctgttattcagaatgatattctgttgtggccatttaaggttgttgctggttctgatgacaag |
7877407 |
T |
|
| Q |
212 |
cctatgattacggttaagtacaagggtcaagataagcacttttgtgctgaggaaatatcttctatggtccttacaaagatgcgagaggttgcagaggcat |
311 |
Q |
| |
|
||| || | |||||||| ||||| | || |||||||||||||| ||||||||||| || ||| |||||||||||||||| ||| |||||||| | |
|
|
| T |
7877408 |
cctgatatcattgttaagtataagggcgaggaaaagcacttttgtgccgaggaaatatcatccatgatccttacaaagatgcgcgagattgcagagaagt |
7877507 |
T |
|
| Q |
312 |
atctggggtcacctgtcaagaatgc |
336 |
Q |
| |
|
| ||| |||||||||||||||||| |
|
|
| T |
7877508 |
ttttggagtcacctgtcaagaatgc |
7877532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 258 - 336
Target Start/End: Original strand, 8636064 - 8636142
Alignment:
| Q |
258 |
ctgaggaaatatcttctatggtccttacaaagatgcgagaggttgcagaggcatatctggggtcacctgtcaagaatgc |
336 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||| |||| ||||||||||||| ||| ||||||||||||| |
|
|
| T |
8636064 |
ctgaggaaatatcgtctatggtcctgacaaagatgcgagagattgctgaggcatatctggaatcatctgtcaagaatgc |
8636142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #20
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 112 - 336
Target Start/End: Complemental strand, 8602567 - 8602343
Alignment:
| Q |
112 |
agatgctaagaggttagttggcaggaagtttagtgatccggttgttcaaaatgatataatgttgtggccattcaaggttacttctggtgttaatgacaag |
211 |
Q |
| |
|
|||||| ||||||||| |||| ||||| | ||||||| | || |||| ||||| ||| |||||||||||| |||||| | |||| | ||||||| |
|
|
| T |
8602567 |
agatgcaaagaggttaattggaaggaaatatagtgattctgtcattcagaatgacatacggttgtggccatttaaggttgttcctggcaatgatgacaaa |
8602468 |
T |
|
| Q |
212 |
cctatgattacggttaagtacaagggtcaagataagcacttttgtgctgaggaaatatcttctatggtccttacaaagatgcgagaggttgcagaggcat |
311 |
Q |
| |
|
||| ||| | |||||||| |||||| || |||||||| |||||||||||||| || || |||||||||||||||||||| || |||||||| | |
|
|
| T |
8602467 |
cctgagatcattgttaagtataagggtggggaaaagcacttctgtgctgaggaaatctcatcaatggtccttacaaagatgcgtgaaattgcagagaagt |
8602368 |
T |
|
| Q |
312 |
atctggggtcacctgtcaagaatgc |
336 |
Q |
| |
|
||||| |||||||||||||||||| |
|
|
| T |
8602367 |
ttctggagtcacctgtcaagaatgc |
8602343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 336
Target Start/End: Complemental strand, 8538629 - 8538405
Alignment:
| Q |
112 |
agatgctaagaggttagttggcaggaagtttagtgatccggttgttcaaaatgatataatgttgtggccattcaaggttacttctggtgttaatgacaag |
211 |
Q |
| |
|
||||||||||||||| ||||| || || | ||||||| | ||| |||| |||||| || |||||||||| |||||||| | | ||| || |||||| || |
|
|
| T |
8538629 |
agatgctaagaggttggttggaagaaaatatagtgattctgttattcagaatgatttactgttgtggcccttcaaggtaaatgctgatgctaatgataaa |
8538530 |
T |
|
| Q |
212 |
cctatgattacggttaagtacaagggtcaagataagcacttttgtgctgaggaaatatcttctatggtccttacaaagatgcgagaggttgcagaggcat |
311 |
Q |
| |
|
|| |||||| || | || ||||| |||| || ||||||| |||||| |||||||| |||||||||| ||||||||||| ||| | || || | || |
|
|
| T |
8538529 |
cccatgattgtcgtgacgtgtaagggggaagagaaacacttttttgctgaagaaatatcagctatggtcctcacaaagatgcgggagttcgctgaagtat |
8538430 |
T |
|
| Q |
312 |
atctggggtcacctgtcaagaatgc |
336 |
Q |
| |
|
| ||| |||||||||||| ||||| |
|
|
| T |
8538429 |
ttttggagtcacctgtcaaaaatgc |
8538405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 336
Target Start/End: Complemental strand, 8582293 - 8582069
Alignment:
| Q |
112 |
agatgctaagaggttagttggcaggaagtttagtgatccggttgttcaaaatgatataatgttgtggccattcaaggttacttctggtgttaatgacaag |
211 |
Q |
| |
|
|||||| ||||||||| |||| ||||| | ||||||| | |||||||||| ||||| | ||||||||| |||||||| || | |||| ||||||||| |
|
|
| T |
8582293 |
agatgcaaagaggttaattggaaggaaatatagtgattccattgttcaaaaggatatcaagttgtggcccttcaaggtcaccgcaggtgctaatgacaaa |
8582194 |
T |
|
| Q |
212 |
cctatgattacggttaagtacaagggtcaagataagcacttttgtgctgaggaaatatcttctatggtccttacaaagatgcgagaggttgcagaggcat |
311 |
Q |
| |
|
|| | || || || ||||||||| | || || |||||| |||||| |||||||| ||| | | || ||| ||||||||||| |||||||||||| |
|
|
| T |
8582193 |
ccgacaatcgttgtgaactacaagggtaaggaaaaacactttcttgctgaagaaatatcatctgttattctgacacagatgcgagagattgcagaggcat |
8582094 |
T |
|
| Q |
312 |
atctggggtcacctgtcaagaatgc |
336 |
Q |
| |
|
| ||| ||||||||| |||||||| |
|
|
| T |
8582093 |
ttttggagtcacctgttaagaatgc |
8582069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 8671144 - 8671191
Alignment:
| Q |
54 |
ttagtatgcaattgctattttagctcgacaaatgaatgatgggaattt |
101 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
8671144 |
ttagtatgcaattgctattttagctggataaatgaatgatgggaattt |
8671191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 307
Target Start/End: Original strand, 8382543 - 8382646
Alignment:
| Q |
204 |
atgacaagcctatgattacggttaagtacaagggtcaagataagcacttttgtgctgaggaaatatcttctatggtccttacaaagatgcgagaggttgc |
303 |
Q |
| |
|
||||||||||| ||| | |||||||| |||||| | || || ||| ||||||| |||||||| || ||||||||||| | ||||||||| ||| |||| |
|
|
| T |
8382543 |
atgacaagcctgagataattgttaagtataagggtgaggaaaaacacctttgtgccgaggaaatctcctctatggtcctcaaaaagatgcgtgagattgc |
8382642 |
T |
|
| Q |
304 |
agag |
307 |
Q |
| |
|
|||| |
|
|
| T |
8382643 |
agag |
8382646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 336
Target Start/End: Complemental strand, 8591170 - 8591007
Alignment:
| Q |
173 |
ttgtggccattcaaggttacttctggtgttaatgacaagcctatgattacggttaagtacaagggtcaagataagcacttttgtgctgaggaaatatctt |
272 |
Q |
| |
|
||||||||||| |||||| ||| ||| || ||||||||||| || | ||||||||||||||| | || |||| ||||||| |||||||| || | |
|
|
| T |
8591170 |
ttgtggccatttaaggttgtttccggttttgatgacaagcctgaaatcattgttaagtacaagggtgaggaaaagcgtctttgtgcggaggaaatctcat |
8591071 |
T |
|
| Q |
273 |
ctatggtccttacaaagatgcgagaggttgcagaggcatatctggggtcacctgtcaagaatgc |
336 |
Q |
| |
|
| ||||| || ||||||||||||||| |||| || | | ||| |||||||||||||||||| |
|
|
| T |
8591070 |
ccatggttctcacaaagatgcgagagattgctgaaaagtttttggagtcacctgtcaagaatgc |
8591007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 13332971 - 13333011
Alignment:
| Q |
54 |
ttagtatgcaattgctattttagctcgacaaatgaatgatg |
94 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
13332971 |
ttagtatgcaattgctattttatttggacaaatgaatgatg |
13333011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 3e-76; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 112 - 336
Target Start/End: Original strand, 9335466 - 9335690
Alignment:
| Q |
112 |
agatgctaagaggttagttggcaggaagtttagtgatccggttgttcaaaatgatataatgttgtggccattcaaggttacttctggtgttaatgacaag |
211 |
Q |
| |
|
|||||||||||| ||| ||| |||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
9335466 |
agatgctaagagattaactggtaggaagtttagtgatctggttgttcaaagagatatattgttgtggccattcaaggttatttctggtgttaatgacaaa |
9335565 |
T |
|
| Q |
212 |
cctatgattacggttaagtacaagggtcaagataagcacttttgtgctgaggaaatatcttctatggtccttacaaagatgcgagaggttgcagaggcat |
311 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||| ||||||| |
|
|
| T |
9335566 |
cctatgattactgttaactacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatgagagaggttgcggaggcat |
9335665 |
T |
|
| Q |
312 |
atctggggtcacctgtcaagaatgc |
336 |
Q |
| |
|
|| ||||||| || ||||||||||| |
|
|
| T |
9335666 |
atttggggtcgccggtcaagaatgc |
9335690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 112 - 297
Target Start/End: Complemental strand, 35133039 - 35132854
Alignment:
| Q |
112 |
agatgctaagaggttagttggcaggaagtttagtgatccggttgttcaaaatgatataatgttgtggccattcaaggttacttctggtgttaatgacaag |
211 |
Q |
| |
|
||||||||| |||||| |||| ||||||||||||||||| |||||||| |||||||| || | |||||||||||||| ||| | ||||| |||||||| |
|
|
| T |
35133039 |
agatgctaaaaggttaattggtaggaagtttagtgatcctattgttcaagatgatatactgctatggccattcaaggtcactgccggtgtaaatgacaaa |
35132940 |
T |
|
| Q |
212 |
cctatgattacggttaagtacaagggtcaagataagcacttttgtgctgaggaaatatcttctatggtccttacaaagatgcgaga |
297 |
Q |
| |
|
|| |||||||||||||||||||||| | | || ||||| | | ||| || ||| |||| || ||||| || |||||||||||||| |
|
|
| T |
35132939 |
cccatgattacggttaagtacaaggatgaggaaaagcaactctatgcggaagaagtatcatccatggtactcacaaagatgcgaga |
35132854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 112 - 307
Target Start/End: Complemental strand, 30775845 - 30775650
Alignment:
| Q |
112 |
agatgctaagaggttagttggcaggaagtttagtgatccggttgttcaaaatgatataatgttgtggccattcaaggttacttctggtgttaatgacaag |
211 |
Q |
| |
|
||||||||| |||||| |||| ||||| ||||| || || ||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30775845 |
agatgctaaaaggttaattggtaggaaatttagcgaccctgttgttcaaaaagatattttgttgtggccattcaaggttgtttctggtgttaatgacaaa |
30775746 |
T |
|
| Q |
212 |
cctatgattacggttaagtacaagggtcaagataagcacttttgtgctgaggaaatatcttctatggtccttacaaagatgcgagaggttgcagag |
307 |
Q |
| |
|
|| |||||| | |||||| |||||| || || || | | | ||||| |||||||| || || || ||||| ||||| ||| ||||| |||||||| |
|
|
| T |
30775745 |
cccatgatttcccttaagttcaagggccaggagaaactcctctgtgccgaggaaatttcatcaatagtcctcacaaatatgagagagattgcagag |
30775650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 97
Target Start/End: Original strand, 9335390 - 9335433
Alignment:
| Q |
54 |
ttagtatgcaattgctattttagctcgacaaatgaatgatggga |
97 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
9335390 |
ttagtatgcaattgctattttagctggataaatgaatgatggga |
9335433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 5e-50; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 112 - 336
Target Start/End: Original strand, 16657092 - 16657316
Alignment:
| Q |
112 |
agatgctaagaggttagttggcaggaagtttagtgatccggttgttcaaaatgatataatgttgtggccattcaaggttacttctggtgttaatgacaag |
211 |
Q |
| |
|
||||||||| |||||| | || ||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| | | | || || |||||||| |
|
|
| T |
16657092 |
agatgctaaaaggttaatcggtaggaagtttagtgatcctgttgttcaaaatgatatcatcttgtggccattcaaggtcattgccggagtgaatgacaaa |
16657191 |
T |
|
| Q |
212 |
cctatgattacggttaagtacaagggtcaagataagcacttttgtgctgaggaaatatcttctatggtccttacaaagatgcgagaggttgcagaggcat |
311 |
Q |
| |
|
|| |||||||| || |||| ||||||||||| | || |||||||||||||||||||| |||||| ||||||||||||||||||| ||||| ||||||| |
|
|
| T |
16657192 |
ccaatgattactcttcagtataagggtcaagagagccaattttgtgctgaggaaatatcatctatgatccttacaaagatgcgagaagttgctgaggcat |
16657291 |
T |
|
| Q |
312 |
atctggggtcacctgtcaagaatgc |
336 |
Q |
| |
|
| ||| ||| |||||||||||||| |
|
|
| T |
16657292 |
ttatggagtcgcctgtcaagaatgc |
16657316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 112 - 309
Target Start/End: Original strand, 16661567 - 16661764
Alignment:
| Q |
112 |
agatgctaagaggttagttggcaggaagtttagtgatccggttgttcaaaatgatataatgttgtggccattcaaggttacttctggtgttaatgacaag |
211 |
Q |
| |
|
|||||||||||||||| |||| ||||| |||||||| || ||||||||||| |||||| |||||||||| |||||||||| | |||||||||||||||| |
|
|
| T |
16661567 |
agatgctaagaggttaattggtaggaaatttagtgaccccgttgttcaaaaagatatactgttgtggccgttcaaggttattgctggtgttaatgacaaa |
16661666 |
T |
|
| Q |
212 |
cctatgattacggttaagtacaagggtcaagataagcacttttgtgctgaggaaatatcttctatggtccttacaaagatgcgagaggttgcagaggc |
309 |
Q |
| |
|
|||| ||||| ||||||||||||||||| || |||| | ||||||| |||||||| || ||||| ||||| ||||| ||| |||||||||||||| |
|
|
| T |
16661667 |
cctacgattagtgttaagtacaagggtcaggagaagctcctttgtgccgaggaaatctcatctattgtcctcacaaacatgaaggaggttgcagaggc |
16661764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 112 - 313
Target Start/End: Original strand, 12258156 - 12258357
Alignment:
| Q |
112 |
agatgctaagaggttagttggcaggaagtttagtgatccggttgttcaaaatgatataatgttgtggccattcaaggttacttctggtgttaatgacaag |
211 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||| || |||||| |||||||||||||||||||||| || || ||| ||||||| |||| ||| |
|
|
| T |
12258156 |
agatgctaagaggttaattggtaggaagtttagtgatcaagtagttcaagatgatataatgttgtggccatttaaagtcactgctggtgtcaatggcaaa |
12258255 |
T |
|
| Q |
212 |
cctatgattacggttaagtacaagggtcaagataagcacttttgtgctgaggaaatatcttctatggtccttacaaagatgcgagaggttgcagaggcat |
311 |
Q |
| |
|
|| ||||||||||| ||||||||| |||||| ||||| ||||||| |||||| |||| ||| |||| | |||||||||||||| |||| ||||||| |
|
|
| T |
12258256 |
cccatgattacggtaaagtacaagaatcaagagaagcagctttgtgccgaggaagtatcatctgtggtattgacaaagatgcgagaaattgctgaggcat |
12258355 |
T |
|
| Q |
312 |
at |
313 |
Q |
| |
|
|| |
|
|
| T |
12258356 |
at |
12258357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 112 - 307
Target Start/End: Complemental strand, 43626003 - 43625811
Alignment:
| Q |
112 |
agatgctaagaggttagttggcaggaagtttagtgatccggttgttcaaaatgatataatgttgtggccattcaaggttacttctggtgttaatgacaag |
211 |
Q |
| |
|
|||||||||||||||| | || ||||||||||||||| | ||||||||||||||||| |||||||||||||||| ||| | | || || ||||||| |
|
|
| T |
43626003 |
agatgctaagaggttaatcggtaggaagtttagtgattctgttgttcaaaatgatatcatgttgtggccattcagggtcatt---ggggtggatgacaaa |
43625907 |
T |
|
| Q |
212 |
cctatgattacggttaagtacaagggtcaagataagcacttttgtgctgaggaaatatcttctatggtccttacaaagatgcgagaggttgcagag |
307 |
Q |
| |
|
|| ||||||| || || |||||||||||||| |||| |||||| ||||||||||||| |||||| |||| |||||||||||||||||||||||| |
|
|
| T |
43625906 |
ccaatgattattgtaaaatacaagggtcaagagaagcgtttttgtcctgaggaaatatcgtctatgatcctcacaaagatgcgagaggttgcagag |
43625811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 112 - 297
Target Start/End: Complemental strand, 12235282 - 12235097
Alignment:
| Q |
112 |
agatgctaagaggttagttggcaggaagtttagtgatccggttgttcaaaatgatataatgttgtggccattcaaggttacttctggtgttaatgacaag |
211 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||| ||||||||| ||||| | |||||||||||||||||||| || ||||||| |||||||| |
|
|
| T |
12235282 |
agatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatgtgatgttgtggccattcaaggtcgctgctggtgtcaatgacaaa |
12235183 |
T |
|
| Q |
212 |
cctatgattacggttaagtacaagggtcaagataagcacttttgtgctgaggaaatatcttctatggtccttacaaagatgcgaga |
297 |
Q |
| |
|
|| ||||||| || ||||||||||||| ||| ||||| | ||| | || ||| |||| |||||||| || |||||||||||||| |
|
|
| T |
12235182 |
cccatgattattgtcaagtacaagggtcgagagaagcagctatgtcccgaagaagtatcatctatggtactcacaaagatgcgaga |
12235097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 112 - 297
Target Start/End: Complemental strand, 7542819 - 7542634
Alignment:
| Q |
112 |
agatgctaagaggttagttggcaggaagtttagtgatccggttgttcaaaatgatataatgttgtggccattcaaggttacttctggtgttaatgacaag |
211 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||| ||||||||| |||||||| |||| |||||||||||||| ||| | |||| ||||||| |
|
|
| T |
7542819 |
agatgctaagaggttaattggtaggaagtttagtgatcctgttgttcaagatgatatactgttatggccattcaaggtgactgcgggtgacaatgacaga |
7542720 |
T |
|
| Q |
212 |
cctatgattacggttaagtacaagggtcaagataagcacttttgtgctgaggaaatatcttctatggtccttacaaagatgcgaga |
297 |
Q |
| |
|
|| |||||||| ||||||||||||| ||| || || || | |||||| || |||| |||||||| || |||||||||||||| |
|
|
| T |
7542719 |
cccatgattaccgttaagtacaaggatcaggagaaacaactccatgctgaagaggtatcatctatggtactcacaaagatgcgaga |
7542634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 112 - 313
Target Start/End: Complemental strand, 11999987 - 11999786
Alignment:
| Q |
112 |
agatgctaagaggttagttggcaggaagtttagtgatccggttgttcaaaatgatataatgttgtggccattcaaggttacttctggtgttaatgacaag |
211 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||| ||||||||| ||||| | |||| |||||||||||||| ||| ||| ||| |||||||| |
|
|
| T |
11999987 |
agatgctaagaggttaattggttggaagtttagtgatcttgttgttcaagatgatggattgttatggccattcaaggtcactgctgatgtcaatgacaaa |
11999888 |
T |
|
| Q |
212 |
cctatgattacggttaagtacaagggtcaagataagcacttttgtgctgaggaaatatcttctatggtccttacaaagatgcgagaggttgcagaggcat |
311 |
Q |
| |
|
|| || ||||| ||||||||||| || || || ||||| | |||||||| ||| |||| |||||||| || || ||||||||||| |||| ||||||| |
|
|
| T |
11999887 |
ccaataattactgttaagtacaaaggccaggagaagcagctatgtgctgaagaagtatcatctatggtactaacgaagatgcgagaaattgctgaggcat |
11999788 |
T |
|
| Q |
312 |
at |
313 |
Q |
| |
|
|| |
|
|
| T |
11999787 |
at |
11999786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 112 - 313
Target Start/End: Original strand, 12244981 - 12245182
Alignment:
| Q |
112 |
agatgctaagaggttagttggcaggaagtttagtgatccggttgttcaaaatgatataatgttgtggccattcaaggttacttctggtgttaatgacaag |
211 |
Q |
| |
|
|||||||||||| ||| |||| ||||||||||||||||| |||||| ||||| | | || ||||| |||||||| ||| ||||||| |||||||| |
|
|
| T |
12244981 |
agatgctaagagattaattggtaggaagtttagtgatcctattgttctggatgatgcattattatggccgttcaaggtcactgctggtgtcaatgacaaa |
12245080 |
T |
|
| Q |
212 |
cctatgattacggttaagtacaagggtcaagataagcacttttgtgctgaggaaatatcttctatggtccttacaaagatgcgagaggttgcagaggcat |
311 |
Q |
| |
|
|| || ||||| ||||| ||||| || || || ||||| | |||||||| ||| |||| |||||||| || |||||||||||||| |||| ||||||| |
|
|
| T |
12245081 |
ccaataattactgttaactacaaaggccaggagaagcagctatgtgctgaagaagtatcatctatggtactaacaaagatgcgagaaattgctgaggcat |
12245180 |
T |
|
| Q |
312 |
at |
313 |
Q |
| |
|
|| |
|
|
| T |
12245181 |
at |
12245182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 112 - 236
Target Start/End: Complemental strand, 14704001 - 14703877
Alignment:
| Q |
112 |
agatgctaagaggttagttggcaggaagtttagtgatccggttgttcaaaatgatataatgttgtggccattcaaggttacttctggtgttaatgacaag |
211 |
Q |
| |
|
||||||||||||||| | || ||||||||||| ||||| |||||||| |||||||| | || |||||||| ||||| ||| |||| || ||||||| |
|
|
| T |
14704001 |
agatgctaagaggttgttgggaaggaagtttagcgatcctattgttcaagatgatatacttttatggccatttaaggtcactgctggagtcgatgacaaa |
14703902 |
T |
|
| Q |
212 |
cctatgattacggttaagtacaagg |
236 |
Q |
| |
|
|| |||||||||||||||||||||| |
|
|
| T |
14703901 |
cccatgattacggttaagtacaagg |
14703877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 309
Target Start/End: Original strand, 17666306 - 17666461
Alignment:
| Q |
154 |
tgttcaaaatgatataatgttgtggccattcaaggttacttctggtgttaatgacaagcctatgattacggttaagtacaagggtcaagataagcacttt |
253 |
Q |
| |
|
|||||| | |||||| | |||||||||||| ||| ||| |||||| |||| |||||||||||| ||||| ||||||||| |||||||||| ||| |
|
|
| T |
17666306 |
tgttcagagtgatatgaagttgtggccatttaagattatttctggcccgtatgaaaagcctatgattggtgttaactacaagggtgaagataagcaattt |
17666405 |
T |
|
| Q |
254 |
tgtgctgaggaaatatcttctatggtccttacaaagatgcgagaggttgcagaggc |
309 |
Q |
| |
|
| || || || || ||||| ||||| || || |||||||| |||||||| ||||| |
|
|
| T |
17666406 |
tccgcagaagagatctcttccatggtactcacgaagatgcgtgaggttgctgaggc |
17666461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 112 - 307
Target Start/End: Complemental strand, 15595630 - 15595437
Alignment:
| Q |
112 |
agatgctaagaggttagttggcaggaagtttagtgatccggtt-gttcaaaatgatataatgttgtggccattcaaggttacttctggtgttaatgacaa |
210 |
Q |
| |
|
|||||||||||| ||| | | ||||||||||||||| | ||| |||||||||||||||| |||||||||||||||||| | |||||| |||||||| |
|
|
| T |
15595630 |
agatgctaagagattaatcagtaggaagtttagtgattctgtttgttcaaaatgatataaagttgtggccattcaaggtca---ttggtgtgaatgacaa |
15595534 |
T |
|
| Q |
211 |
gcctatgattacggttaagtacaagggtcaagataagcacttttgtgctgaggaaatatcttctatggtccttacaaagatgcgagaggttgcagag |
307 |
Q |
| |
|
|| ||||||| ||||| |||||||||||||| |||| ||||||||||||||||||||| |||||| | || | |||||||||||||||||||||| |
|
|
| T |
15595533 |
acccatgattattgttaaatacaagggtcaagaaaagcgcttttgtgctgaggaaatatcgtctatgattctcaaaaagatgcgagaggttgcagag |
15595437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 112 - 294
Target Start/End: Original strand, 34466368 - 34466550
Alignment:
| Q |
112 |
agatgctaagaggttagttggcaggaagtttagtgatccggttgttcaaaatgatataatgttgtggccattcaaggttacttctggtgttaatgacaag |
211 |
Q |
| |
|
|||||||||||||||| ||||||| || ||||||||||| | |||||||| ||||| ||||| ||||||||||| |||| | ||||||||||||||||| |
|
|
| T |
34466368 |
agatgctaagaggttaattggcagaaaatttagtgatcctgatgttcaaacagatatgatgttatggccattcaaagttattgctggtgttaatgacaag |
34466467 |
T |
|
| Q |
212 |
cctatgattacggttaagtacaagggtcaagataagcacttttgtgctgaggaaatatcttctatggtccttacaaagatgcg |
294 |
Q |
| |
|
|| |||||| | ||||||| |||||||| || |||||| | |||||||||||||| || |||||| ||||| |||||||||| |
|
|
| T |
34466468 |
ccaatgatttcccttaagtataagggtcaggagaagcacctatgtgctgaggaaatctcatctatgatcctttcaaagatgcg |
34466550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 112 - 303
Target Start/End: Original strand, 4678133 - 4678324
Alignment:
| Q |
112 |
agatgctaagaggttagttggcaggaagtttagtgatccggttgttcaaaatgatataatgttgtggccattcaaggttacttctggtgttaatgacaag |
211 |
Q |
| |
|
|||||||||||||||| |||| |||| || ||||||| | ||||||||||| || || |||||||||||||| | ||| | |||||| ||||| || |
|
|
| T |
4678133 |
agatgctaagaggttaattggtaggaggtatagtgattctgttgttcaaaaagacatcatgttgtggccatttagggtcatcactggtgagaatgataaa |
4678232 |
T |
|
| Q |
212 |
cctatgattacggttaagtacaagggtcaagataagcacttttgtgctgaggaaatatcttctatggtccttacaaagatgcgagaggttgc |
303 |
Q |
| |
|
|| ||||||| |||||||||||||||||||| ||||| || ||| |||||||||||| || ||| |||||||||||||| |||| ||||| |
|
|
| T |
4678233 |
ccgatgattagtgttaagtacaagggtcaagagaagcaagttagtgttgaggaaatatcatcgatgatccttacaaagatgagagaagttgc |
4678324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 115 - 206
Target Start/End: Original strand, 52549098 - 52549189
Alignment:
| Q |
115 |
tgctaagaggttagttggcaggaagtttagtgatccggttgttcaaaatgatataatgttgtggccattcaaggttacttctggtgttaatg |
206 |
Q |
| |
|
||||||||||||| |||| | ||||||||||||||| ||||||||| |||||||| |||| ||| |||||||||| ||| | |||| ||||| |
|
|
| T |
52549098 |
tgctaagaggttaattggtaagaagtttagtgatcctgttgttcaagatgatatattgttatggtcattcaaggtcactgccggtgataatg |
52549189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 112 - 309
Target Start/End: Complemental strand, 28220544 - 28220347
Alignment:
| Q |
112 |
agatgctaagaggttagttggcaggaagtttagtgatccggttgttcaaaatgatataatgttgtggccattcaaggttacttctggtgttaatgacaag |
211 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||| | ||||||||| ||||||||| |||||||||||||||||| | ||| || || ||||| |
|
|
| T |
28220544 |
agatgctaagaggttaattggtaggaagtttagtgactctgttgttcaagatgatataaagttgtggccattcaaggtcatttccggaacgaacgacaaa |
28220445 |
T |
|
| Q |
212 |
cctatgattacggttaagtacaagggtcaagataagcacttttgtgctgaggaaatatcttctatggtccttacaaagatgcgagaggttgcagaggc |
309 |
Q |
| |
|
|| |||||| | |||||||||||||| || || |||||| | ||||| || ||||| || |||||||| || ||||||||||| ||| |||||||||| |
|
|
| T |
28220444 |
cccatgatttctgttaagtacaagggacaggagaagcacctatgtgccgaagaaatctcatctatggttctaacaaagatgcgtgagattgcagaggc |
28220347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 189
Target Start/End: Original strand, 42555530 - 42555596
Alignment:
| Q |
123 |
ggttagttggcaggaagtttagtgatccggttgttcaaaatgatataatgttgtggccattcaaggt |
189 |
Q |
| |
|
||||| |||| |||||||||| |||| |||||||||||||| || | |||||||||||||||||| |
|
|
| T |
42555530 |
ggttaattggtaggaagtttaatgattatgttgttcaaaatgacatgaagttgtggccattcaaggt |
42555596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 112 - 307
Target Start/End: Complemental strand, 43745440 - 43745245
Alignment:
| Q |
112 |
agatgctaagaggttagttggcaggaagtttagtgatccggttgttcaaaatgatataatgttgtggccattcaaggttacttctggtgttaatgacaag |
211 |
Q |
| |
|
|||||||||||||||| |||| |||||||||| |||| | | ||||||||||||||| | ||||||||| |||||||| | ||| || | |||||||| |
|
|
| T |
43745440 |
agatgctaagaggttaattggtaggaagtttaatgattctgatgttcaaaatgatatgaagttgtggccgttcaaggtcatttccggattgaatgacaaa |
43745341 |
T |
|
| Q |
212 |
cctatgattacggttaagtacaagggtcaagataagcacttttgtgctgaggaaatatcttctatggtccttacaaagatgcgagaggttgcagag |
307 |
Q |
| |
|
|| ||||| | |||||||||||||| || || |||||| | ||||| || ||||| || |||||| | || ||||||||||| ||| |||||||| |
|
|
| T |
43745340 |
cccgtgatttctgttaagtacaagggacaggagaagcacctatgtgccgaagaaatctcatctatgattctaacaaagatgcgtgagattgcagag |
43745245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 12528953 - 12528873
Alignment:
| Q |
256 |
tgctgaggaaatatcttctatggtccttacaaagatgcgagaggttgcagaggcatatctggggtcacctgtcaagaatgc |
336 |
Q |
| |
|
|||||| |||||||| |||||| | || || ||||||||||| ||||||| |||| ||| | ||||||||| |||||||| |
|
|
| T |
12528953 |
tgctgaagaaatatcctctatgattctatcacagatgcgagagattgcagatgcatttcttgagtcacctgttaagaatgc |
12528873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 305
Target Start/End: Complemental strand, 28911175 - 28910982
Alignment:
| Q |
112 |
agatgctaagaggttagttggcaggaagtttagtgatccggttgttcaaaatgatataatgttgtggccattcaaggttacttctggtgttaatgacaag |
211 |
Q |
| |
|
||||||||||||| || ||| ||||||||||||||||| ||||||||||| ||| |||||||| ||| |||||||| | | | ||||| |||||||| |
|
|
| T |
28911175 |
agatgctaagaggataattgataggaagtttagtgatcccgttgttcaaaacgattcaatgttgtcgccgttcaaggtcattgccggtgtcaatgacaac |
28911076 |
T |
|
| Q |
212 |
cctatgattacggttaagtacaagggtcaagataagcacttttgtgctgaggaaatatcttctatggtccttacaaagatgcgagaggttgcag |
305 |
Q |
| |
|
|| ||||| | || |||||||||| ||| || ||| | || |||||||||||||| || ||| |||| || ||||||| || ||| |||||| |
|
|
| T |
28911075 |
cccatgatatctgtcaagtacaaggatcaggagaagaaattatgtgctgaggaaatctcatctgtggttctctcaaagattcgcgagattgcag |
28910982 |
T |
|
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