View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7498_high_6 (Length: 402)
Name: NF7498_high_6
Description: NF7498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7498_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 10 - 384
Target Start/End: Complemental strand, 54012021 - 54011647
Alignment:
| Q |
10 |
attattctccaacacatcctttatgtctaaaactattgtgcctgacacgtggataatataaatgtcccttaacgaacttaggataggttctgatacaatt |
109 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54012021 |
attattttccaacacatcctttatgtctaaaactattgtgcctgacacgtggataatataaatgtcccttaacgaacttaggataggttctgatacaatt |
54011922 |
T |
|
| Q |
110 |
ttaaccagcatataatgtgagtattgcctaaaaattatttagacgatgacagtgtatatgaattaaatcgtattttaaattgttattatttgactgaaaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54011921 |
ttaaccagcatataatgtgagtattgcctaaaaattatctagacgatgacagtgtatatgaattaaatcgtattttaaattgttattatttgactgaaaa |
54011822 |
T |
|
| Q |
210 |
cagaatgaatccctaaatggtggtggaaagctttttgtggacaagcatccaaaccttaaggttagagttgttcatggaaacacattaactgctgctgtca |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54011821 |
cagaatgaatccctaaatggtggtggaaagctttttgtggacaagcatccaaaccttaaggttagagttgttcatggaaacacattaactgctgctgtca |
54011722 |
T |
|
| Q |
310 |
ttctcaatgagatccctcaagatgtggaagaggtgttcttaacaggagctacgtccaaacttggaagagcaattg |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54011721 |
ttctcaatgagatccctcaagatgtggaagaggtgttcttaacaggagctacgtccaaacttggaagagcaattg |
54011647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University