View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7498_high_8 (Length: 384)
Name: NF7498_high_8
Description: NF7498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7498_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 17 - 366
Target Start/End: Complemental strand, 29587354 - 29587005
Alignment:
| Q |
17 |
tttagtacatggttccctagctagatgttcataattgtattctattagtcacactgcacatatgtactctatcatattcacaatgtaagaactaagaaat |
116 |
Q |
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| T |
29587354 |
tttagtatatggttccctagctagatgttcataattgtattctattagtcacactgcacatatgtactctatcatattcacaatgtaggaactaagaaat |
29587255 |
T |
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| Q |
117 |
gtagaagttcatttgtatatctttttaccacattttatttcactcaaactcaaatcacaatcattgtttttctgtggctcctattatatattttttcctt |
216 |
Q |
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| T |
29587254 |
gtagaagttcatttgtatatctttttaccacattttatttcactcaaactcaaatcacaatcattgtttttctgtggctcctattatatattttttcctt |
29587155 |
T |
|
| Q |
217 |
ttatgaaaagctgaaaaatattgttgtttctgttatgaaattttagtttctagaccactgattgaaaacatatttgttgaatgatatactgttatatttt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29587154 |
ttatgaaaagctgaaaaatattgttgtttctgttatgaaattttaatttctagaccactgattgaaaacatatttgttgaatgatatactgttatatttt |
29587055 |
T |
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| Q |
317 |
agactttggagtattatttttaatttttgggatgctgaaaatacgtggta |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29587054 |
agactttggagtattatttttaatttttgggatgctgaaaatacgtggta |
29587005 |
T |
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