View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7498_high_9 (Length: 304)
Name: NF7498_high_9
Description: NF7498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7498_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 10 - 286
Target Start/End: Complemental strand, 23430891 - 23430612
Alignment:
| Q |
10 |
aagaatatgaacacttaacattgcatcttcatttccactagacccacatcaacaaatcaaattatccta---atacataaagtacattaactagtataac |
106 |
Q |
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| T |
23430891 |
aagaaaatgaacacttaacattgcatcttcatttccactagacccacatcaacaaatcaaattatcctcctcatacataaagtacattaactagtataac |
23430792 |
T |
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| Q |
107 |
tattataatataactggaaggaatgtaagacgagatggcatgagaaattttctcagcagcatctacaacatcttgtccttgatttgcgatatttccaaca |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
23430791 |
tattataatataactggaaggaatgtaagacgagatggcatgagaaattttctcagcggcatctacaacatcttgtccttgattcgcgatatttccaaca |
23430692 |
T |
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| Q |
207 |
tcttttgcagtttcaccaatcctatctgcaccttcactaacaacattgaagaccccttgcatgcttctacgagtggaagg |
286 |
Q |
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| T |
23430691 |
tcttttgcagtttcaccaatcctatctgcaccttcactaacaacattgaagaccccttgcatgcttctacgagtggaagg |
23430612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 70 - 182
Target Start/End: Complemental strand, 23438901 - 23438789
Alignment:
| Q |
70 |
attatcctaatacataaagtacattaactagtataactattataatataactggaaggaatgtaagacgagatggcatgagaaattttctcagcagcatc |
169 |
Q |
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|||||||| ||||||||| ||||| ||| ||||||||| |||||||||||||||||||||||||| | ||| ||||||| |||| |||| ||||| |||| |
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| T |
23438901 |
attatccttatacataaactacataaaccagtataactgttataatataactggaaggaatgtaaaaagaggtggcatgggaaactttcccagcaacatc |
23438802 |
T |
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| Q |
170 |
tacaacatcttgt |
182 |
Q |
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| T |
23438801 |
tacgacatcttgt |
23438789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 23445637 - 23445571
Alignment:
| Q |
57 |
atcaacaaatcaaattatcctaatacataaagtacattaactagtataactattataatataactgg |
123 |
Q |
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| T |
23445637 |
atcaacaaataaaattattctcatgcataaagtacataaaccattataactgttataatataactgg |
23445571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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