View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7498_low_1 (Length: 851)

Name: NF7498_low_1
Description: NF7498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7498_low_1
NF7498_low_1
[»] chr4 (6 HSPs)
chr4 (17-565)||(9504206-9504732)
chr4 (612-837)||(9503897-9504122)
chr4 (119-186)||(8472537-8472604)
chr4 (128-216)||(11271723-11271811)
chr4 (129-197)||(28232807-28232874)
chr4 (43-74)||(51087577-51087608)
[»] chr7 (1 HSPs)
chr7 (116-216)||(32156346-32156447)
[»] chr1 (2 HSPs)
chr1 (109-157)||(39551353-39551401)
chr1 (137-170)||(27728190-27728223)
[»] chr6 (3 HSPs)
chr6 (109-166)||(6449331-6449388)
chr6 (109-170)||(31694975-31695036)
chr6 (43-80)||(8424722-8424759)
[»] chr3 (4 HSPs)
chr3 (132-212)||(39553815-39553896)
chr3 (129-200)||(34569991-34570062)
chr3 (127-197)||(23186866-23186936)
chr3 (135-177)||(38692793-38692835)
[»] chr5 (1 HSPs)
chr5 (109-216)||(16895317-16895424)
[»] chr8 (2 HSPs)
chr8 (146-216)||(14458131-14458202)
chr8 (109-166)||(30624017-30624074)
[»] chr2 (1 HSPs)
chr2 (121-199)||(38192023-38192102)


Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 17 - 565
Target Start/End: Complemental strand, 9504732 - 9504206
Alignment:
Q  17 aggaatttgggtattaaaggggtttctaagtcccacatcaagtagtatgggatgctcgatggagagtacttcgtgtagtctgggatttgcataatcacag 116  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  9504732 aggaatttgggt-ttaaaggggtttctaagtcccacatcgagtagtatgggatgctcgatggagagtacttcgtgtagtctgggattggcagaatcacag 9504634  T
Q  117 tgagccaccacaattttggcaaaagctagactttggagcttcaacaaaatcacaatgccactatgattttaccaaactcaccgtcatccaaacatacact 216  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  9504633 tgagccaccgcaattttggcaaaagctagactttggagcttcaacaaaatcacaatgccactatgattttaccaaattaaccgtcatccaaacatacact 9504534  T
Q  217 cttgtggcttgattcattgcccttgtctgctaacttttaagggagaatttcactagtggcagtgcttaggtgcttatcagaaatttaatttccttcagcc 316  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||                     ||    
T  9504533 cttgtggcttgactcattgcccttgtctgctaacttttaagggagaatttcaccagtggcagtgcttaggtgcttat---------------------cc 9504455  T
Q  317 tgccactcttcaaatcctgaaattatataaatacgagagatcttagatgttggaacaaatttcattttggttgttttcttcaggaaacaaaatcattaaa 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9504454 tgccactcttcaaatcctgaaattatataaatacgagagatcttagatgttggaacaaatttcattttggttgttttcatcaggaaacaaaatcattaaa 9504355  T
Q  417 ttacaatcaatcgagatcgaacaaagaataaatgagctcatgtagttcaagggacagagaaacacctgccagacattgcatttatttgtaccaagaaaac 516  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9504354 ttacaatcaatcaagatcgaacaaagaataaatgagctcatgtagttcaagggacagagaaacacctgccagacattgcatttatttgtaccaagaaaac 9504255  T
Q  517 tcccttgggtaatcttttgcctcttcttatcaacttagaagaaaatgtt 565  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  9504254 tcccttgggtaatcttttgcctcttctcatcaactgagaagaaaatgtt 9504206  T

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Target: chr4; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 612 - 837
Target Start/End: Complemental strand, 9504122 - 9503897
Alignment:
Q  612 atttgggtggcatcagcaacatatcttatgttctaaacaactccactgatgtaattcattaggcattaaagagctcaccagcaaagggcagggaaccagt 711  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9504122 atttgggtggcatcagcaacatatcttatgttctaaacaacttcactgatgtaattcattaggcattaaagagctcaccagcaaagggcagggaaccagt 9504023  T
Q  712 gatcgagaagtaattagtttaaacccccaagatgatccaccatataccacaataatacaagtcctaagcaagttcttggcatcaagtacagtgaaaaaac 811  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9504022 gattgagaagtaattagtttaaacccccaagatgatccaccatataccacaataatacaagtcctaagcaagttcttggcatcaagtacagtgaaaaaac 9503923  T
Q  812 ttgtgatcaaatgcaagataacacca 837  Q
    ||||||||||||||||||||||||||    
T  9503922 ttgtgatcaaatgcaagataacacca 9503897  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 8472537 - 8472604
Alignment:
Q  119 agccaccacaattttggcaaaagctagactttggagcttcaacaaaatcacaatgccactatgatttt 186  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||  ||||||||    
T  8472537 agccaccacaattttggcaaaagctacactttgtagcttcaacaaaatcacagtgccatcatgatttt 8472604  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 216
Target Start/End: Complemental strand, 11271811 - 11271723
Alignment:
Q  128 aattttggcaaaagctagactttggagcttcaacaaaatcacaatgccactatgattttaccaaactcaccgtcatccaaacatacact 216  Q
    ||||||| ||||| ||| |||||||||||| | |||||||||  || ||| ||||||||  ||||||||||||  ||||||||| ||||    
T  11271811 aattttgacaaaaactacactttggagctttatcaaaatcactgtgacaccatgattttgtcaaactcaccgtattccaaacatgcact 11271723  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 28232807 - 28232874
Alignment:
Q  129 attttggcaaaagctagactttggagcttcaacaaaatcacaatgccactatgattttaccaaactcac 197  Q
    |||||| ||||||||| ||||||||||||| | ||||||||||  |||||||||||||  |||||||||    
T  28232807 attttgccaaaagctacactttggagcttccataaaatcacaa-cccactatgattttgtcaaactcac 28232874  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 74
Target Start/End: Original strand, 51087577 - 51087608
Alignment:
Q  43 taagtcccacatcaagtagtatgggatgctcg 74  Q
    ||||||||||||||||||||||||||||||||    
T  51087577 taagtcccacatcaagtagtatgggatgctcg 51087608  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 216
Target Start/End: Complemental strand, 32156447 - 32156346
Alignment:
Q  116 gtgagccaccacaattttggcaaaagctagactttggagcttcaacaaaatcacaatgccactatgattttaccaaactcac-cgtcatccaaacataca 214  Q
    |||||| |||||||||||| ||||| ||| | ||||||  ||||||||||||||||||||| | ||||||| || |||||||   |||||||||||||||    
T  32156447 gtgagctaccacaattttgacaaaaactatattttggatattcaacaaaatcacaatgccaatgtgattttgcctaactcactactcatccaaacataca 32156348  T
Q  215 ct 216  Q
    ||    
T  32156347 ct 32156346  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 39551353 - 39551401
Alignment:
Q  109 aatcacagtgagccaccacaattttggcaaaagctagactttggagctt 157  Q
    |||||||||||||||||||||||||| ||||| ||| ||||||||||||    
T  39551353 aatcacagtgagccaccacaattttgccaaaacctacactttggagctt 39551401  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 170
Target Start/End: Original strand, 27728190 - 27728223
Alignment:
Q  137 aaaagctagactttggagcttcaacaaaatcaca 170  Q
    |||||||| |||||||||||||||||||||||||    
T  27728190 aaaagctacactttggagcttcaacaaaatcaca 27728223  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 6449331 - 6449388
Alignment:
Q  109 aatcacagtgagccaccacaattttggcaaaagctagactttggagcttcaacaaaat 166  Q
    |||||| |||||||||||||||||  ||| |||||| |||||| ||||||||||||||    
T  6449331 aatcactgtgagccaccacaatttccgcagaagctacactttgaagcttcaacaaaat 6449388  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 31694975 - 31695036
Alignment:
Q  109 aatcacagtgagccaccacaattttggcaaaagctagactttggagcttcaacaaaatcaca 170  Q
    |||||| ||||| |||  |||||||||||||||||| ||||||||| || ||||||||||||    
T  31694975 aatcacggtgagtcacttcaattttggcaaaagctacactttggagattaaacaaaatcaca 31695036  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 8424722 - 8424759
Alignment:
Q  43 taagtcccacatcaagtagtatgggatgctcgatggag 80  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  8424722 taagtcccacatcaagtagtatgggatgttcggtggag 8424759  T

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Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 39553815 - 39553896
Alignment:
Q  132 ttggcaaaagctagactttggagcttcaacaaaatcacaatgccactatgattttaccaaactcaccgtc-atccaaacata 212  Q
    ||||||||||||  | ||||||  ||||||||||||||| || |||  |||||||||||||||||| ||| |||||||||||    
T  39553815 ttggcaaaagctgcattttggattttcaacaaaatcacagtgtcaccgtgattttaccaaactcactgtcaatccaaacata 39553896  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 200
Target Start/End: Original strand, 34569991 - 34570062
Alignment:
Q  129 attttggcaaaagctagactttggagcttcaacaaaatcacaatgccactatgattttaccaaactcaccgt 200  Q
    |||||| ||||||||  |||||| |  || |||||||||||||||||||| |||||||| ||||||| ||||    
T  34569991 attttgacaaaagctgcactttgaaaatttaacaaaatcacaatgccactgtgattttatcaaactcgccgt 34570062  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 23186936 - 23186866
Alignment:
Q  127 caattttggcaaaagctagactttggagcttcaacaaaatcacaatgccactatgattttaccaaactcac 197  Q
    |||||||| |||||| || ||||| ||||||||||||||||||  ||||| | ||||||| || |||||||    
T  23186936 caattttgccaaaagttacactttagagcttcaacaaaatcacggtgccagtgtgattttgcctaactcac 23186866  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 177
Target Start/End: Original strand, 38692793 - 38692835
Alignment:
Q  135 gcaaaagctagactttggagcttcaacaaaatcacaatgccac 177  Q
    |||||| ||| ||||||||||||||||||||||||| ||||||    
T  38692793 gcaaaaactacactttggagcttcaacaaaatcacagtgccac 38692835  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 216
Target Start/End: Complemental strand, 16895424 - 16895317
Alignment:
Q  109 aatcacagtgagccaccacaattttggcaaaagctagactttggagcttcaacaaaatcacaatgccactatgattttaccaaactcaccgtc-atccaa 207  Q
    ||||||||||||||||||  ||| | |||||| ||| ||||||||||||| ||| ||||||| ||||||  || |||| ||||| ||||  || ||||||    
T  16895424 aatcacagtgagccaccatgattattgcaaaatctacactttggagcttc-acagaatcacagtgccacagtggttttgccaaattcactatcaatccaa 16895326  T
Q  208 acatacact 216  Q
    |||||||||    
T  16895325 acatacact 16895317  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 216
Target Start/End: Complemental strand, 14458202 - 14458131
Alignment:
Q  146 actttggagcttcaacaaaatcacaatgccactatgattttaccaaactcac-cgtcatccaaacatacact 216  Q
    |||||| ||||| || |||||||||||||||||| |||||  ||||||||||   |||||||||||||||||    
T  14458202 actttgtagctttaagaaaatcacaatgccactaagatttcgccaaactcacaactcatccaaacatacact 14458131  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 30624074 - 30624017
Alignment:
Q  109 aatcacagtgagccaccacaattttggcaaaagctagactttggagcttcaacaaaat 166  Q
    ||||||| ||| ||||||| ||||||||||||| |  ||||| |||||||||||||||    
T  30624074 aatcacattgaaccaccacgattttggcaaaagttgcactttcgagcttcaacaaaat 30624017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 199
Target Start/End: Original strand, 38192023 - 38192102
Alignment:
Q  121 ccaccacaattttggcaaaagctagactttggagcttcaacaaaatcacaatgccactatgatttta-ccaaactcaccg 199  Q
    ||||||| ||| |||||||| ||| ||||   ||||||||||||||||||||| |||| | |||||| ||||||||||||    
T  38192023 ccaccacgattctggcaaaaactacacttcaaagcttcaacaaaatcacaatgtcactgtaattttacccaaactcaccg 38192102  T

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