View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7498_low_12 (Length: 231)
Name: NF7498_low_12
Description: NF7498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7498_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 26792138 - 26791926
Alignment:
| Q |
1 |
attcacatgtagaagagagtcaagattaaatgattttgtgggctttacttcatcaattgcacacaaatttaattaaattagatnnnnnnnnngatgatag |
100 |
Q |
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| T |
26792138 |
attcacatgtagaagagagtcaagattaaatgattttgtgggctttacttcatcaattgcacacaaatttaattaaattagataaaaaaaa-gatgatag |
26792040 |
T |
|
| Q |
101 |
aaagaaatatgttagtttaggtttggtctgttccatgcgatgaattgaatcaaagaatgagaaggatgttaaacccaagcaggaaacatttaaatctgaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
26792039 |
aaagaaatatgttagtttaggtttggtctgttccatgcgatgaattgaatcaaagaatgagaaggatgttaaacctaagcaggaaacatttaaatctgaa |
26791940 |
T |
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| Q |
201 |
agataacaaaaatc |
214 |
Q |
| |
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|||||||||||||| |
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| T |
26791939 |
agataacaaaaatc |
26791926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 31242369 - 31242581
Alignment:
| Q |
1 |
attcacatgtagaagagagtcaagattaaatgattttgtgggctttacttcatcaattgcacacaaatttaattaaattagatnnnnnnnnngatgatag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
31242369 |
attcacatgtagaagagagtcaagattaaatgattttgtgggctttacttcatcaattgcacacaaatttaattaaattagataaaaaaaa-gatgatag |
31242467 |
T |
|
| Q |
101 |
aaagaaatatgttagtttaggtttggtctgttccatgcgatgaattgaatcaaagaatgagaaggatgttaaacccaagcaggaaacatttaaatctgaa |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31242468 |
aaagaaatatgttagtttaggtttggtctggtccatgcgatgaattgaatcaaagaatgagaaggatgttaaacccaagcaggaaacatttaaatctgaa |
31242567 |
T |
|
| Q |
201 |
agataacaaaaatc |
214 |
Q |
| |
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|||||||||||||| |
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| T |
31242568 |
agataacaaaaatc |
31242581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 43619062 - 43618850
Alignment:
| Q |
1 |
attcacatgtagaagagagtcaagattaaatgattttgtgggctttacttcatcaattgcacacaaatttaattaaattagatnnnnnnnnngatgatag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
43619062 |
attcacatgtagaagagagtcaagattaaatgattttgtgggctttacttcatcaattgcacacaaatttaattaaattagataaaaaaaa-gatgatag |
43618964 |
T |
|
| Q |
101 |
aaagaaatatgttagtttaggtttggtctgttccatgcgatgaattgaatcaaagaatgagaaggatgttaaacccaagcaggaaacatttaaatctgaa |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43618963 |
aaagaaatatgttagtttaggtttggtctgttccatgcgatgaattgaatcaaagaatgagaaggatgttaaacccaagcaggaaacatttaaatctgaa |
43618864 |
T |
|
| Q |
201 |
agataacaaaaatc |
214 |
Q |
| |
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|||||| ||||||| |
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|
| T |
43618863 |
agataataaaaatc |
43618850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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