View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7498_low_2 (Length: 672)
Name: NF7498_low_2
Description: NF7498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7498_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 584; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 8 - 619
Target Start/End: Original strand, 44095676 - 44096286
Alignment:
| Q |
8 |
cgaagaatattgatcatgacatgagttagagtaaaatttcttcaagtattggtaatgttatggattgagcttttgggttgagccaagcataataccgcat |
107 |
Q |
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| T |
44095676 |
cgaataatattgatcatgacatgagttagagtaaaatttcttcaagtattggtaatgttatggattgagcttttgggttgagccaagcataataccgcat |
44095775 |
T |
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| Q |
108 |
ccattaaacatcacactatgacctattaggatatgcttcattttaaacctcttacactcctcaaatattatactaacctaaacgtaaaattgtttgcatg |
207 |
Q |
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| T |
44095776 |
ccattaaacatcacactatgacctattaggatatgcttcatcttaaacctcttacactcctcaaatattatactaacctaaacgtaaaattgtttgcatg |
44095875 |
T |
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| Q |
208 |
tagactctcatcatcgatcaccctcttcgacgtgaattatgaccaaacaccatcattcaagaagcgcttattccactaagttgccatcaccattgtggtt |
307 |
Q |
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| T |
44095876 |
taggctctcatcatcgatcaccctcttcgacgtgaattatgaccaaacaccatcattcaagaagcgcttattccactaagttgccatcaccattgtggtt |
44095975 |
T |
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| Q |
308 |
ctgagttgtgcccctatataaacattggtattatgagaaatattgttgcccctcttaaatatttttccttttaaaataacaagggactaacttgtccctt |
407 |
Q |
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| T |
44095976 |
ctgagttgtgcccctatataaacattggtattatgagaaatattgttgcccctcttaaatatttttccttttaaaataacaagggactaacttgtccctt |
44096075 |
T |
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| Q |
408 |
caaagatgaaacataccacatgttatttaaatacttggattaagcgacttttttgcttcaaaacatattcaagttgaatcaccactcttgcaaagcagaa |
507 |
Q |
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| T |
44096076 |
caaaggtgaaacataccacatgttatttaaatacttggattaagcgac-tttttgcttcaaaacatattcaagttgaatcaccactcttgcaaagcagaa |
44096174 |
T |
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| Q |
508 |
aacgactctaacaccactcttaggttaccatagcctaaattatcaggtgatcattacattgaatttatgagagcaaccacacaaatagtttgaacccaac |
607 |
Q |
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| T |
44096175 |
aacgactctaacaccactcttaggttaccatagcctaaattataaggtgatcattacattgaatttatgagagcaaccacacaaatagtttgaacccaac |
44096274 |
T |
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| Q |
608 |
atctttagccaa |
619 |
Q |
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|||||||||||| |
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| T |
44096275 |
atctttagccaa |
44096286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 600 - 654
Target Start/End: Original strand, 44096285 - 44096339
Alignment:
| Q |
600 |
aacccaacatctttagccaaagccttaaatcattaagtatattgatcatctcact |
654 |
Q |
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| T |
44096285 |
aacccaacatctttagccaaagccttaaatcattaagtatattgatcatctcact |
44096339 |
T |
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