View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7498_low_3 (Length: 661)
Name: NF7498_low_3
Description: NF7498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7498_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 625; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 1 - 645
Target Start/End: Original strand, 12029141 - 12029785
Alignment:
| Q |
1 |
tactttaaaaattaagcgtacaaacaatccattaactgaatacccaacatgttaaatttgaagttttaaccacttgttggaccaacattttattgaatat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
12029141 |
tactttaaaaattaagcgtacaaacaatccattaactgaatacccaacatgttaaattttaagttttaaccacttgttggaccaacattttattgaatat |
12029240 |
T |
|
| Q |
101 |
tgacattgatcacttccacatgagctttatttctttctttaatacaaagattctattgtttgtaagcaaaaatcttgaatttgtgaagatttttgctaat |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12029241 |
tgacattgatcacttccacatgagcttcatttctttctttaatacaaagattctattgtttgtaagcaaaaatcttgaatttgtgaagatttttgctaat |
12029340 |
T |
|
| Q |
201 |
ttcatgaattgaagcaactacagctgccaatgaaacaaggaaacatacacaattcaaacattgaagggcacaccacctaagtgacattggtcttataccc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12029341 |
ttcatgaattgaagcaactacagctgccaatgaaacaaggaaacatacacaattcaaacattgaagggcacaccacctaagtgacattggtcttataccc |
12029440 |
T |
|
| Q |
301 |
ttctgagcaatatgcatttgtataggaaagaagacaactaaaggaccaaacccaattgctccaagcagagcaagaatttgattgaaaaatggcattgcca |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
12029441 |
ttctgagcaatatgcatttgtataggaaagaagacaactaaaggaccaaacccaattgctccaagtagagcaagaatttgattgaaaaatggcattgcca |
12029540 |
T |
|
| Q |
401 |
tggcaagagttgttcctagtatcacaaatattgtcctccaaattaacctaaacaagttcaagttgattgttacaccgcacaagctaatcggatgttcctt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12029541 |
tggcaagagttgttcctagtatcacaaatattgtcctccaaattaacctaaacaagttcaagttgattgttacaccgcacaagctaatcggatgttcctt |
12029640 |
T |
|
| Q |
501 |
gtttatgaaatttgatatgggccacatgatattagcacccatttcgatgaaacggaagaatggttgacccatcacttgatatgctccaatcatgtggatt |
600 |
Q |
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| T |
12029641 |
gtttatgaaatttgatatgggccacatgatattagcacccatttcgatgaaacgaaagaatggttgacccatcacttgatatgctccaatcatgtggatt |
12029740 |
T |
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| Q |
601 |
acaatgcatatatctccaatcacaaccaaccagtagggttcatga |
645 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
12029741 |
acaatgcatatatctccaatgacaaccaaccagtagggttcatga |
12029785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 155; Significance: 6e-82; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 143 - 481
Target Start/End: Original strand, 221045 - 221383
Alignment:
| Q |
143 |
tacaaagattctattgtttgtaagcaaaaatcttgaatttgtgaagatttttgctaatttcatgaattgaagcaactacagctgccaatgaaacaaggaa |
242 |
Q |
| |
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||||| ||| ||||||||| ||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||| ||| |||||||| |||| | |
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| T |
221045 |
tacaatgatgctattgtttataagcaaaaatcttgtatttgtgaatattttcgctaatttcatgaattgaagcaactatagcagccaatgagacaaccat |
221144 |
T |
|
| Q |
243 |
acatacacaattcaaacattgaagggcacaccacctaagtgacattggtcttatacccttctgagcaatatgcatttgtataggaaagaagacaactaaa |
342 |
Q |
| |
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||| | |||||||||| ||| || ||||||||||| | || | ||| | |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
221145 |
acaaagacaattcaaaagttggagcgcacaccacctcaacgataacacgggtatgcgcttctgagcaatgtgcatttgtataggaaagaagacaactaat |
221244 |
T |
|
| Q |
343 |
ggaccaaacccaattgctccaagcagagcaagaatttgattgaaaaatggcattgccatggcaagagttgttcctagtatcacaaatattgtcctccaaa |
442 |
Q |
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|| ||||| ||||| ||||| | |||||| |||| ||||||||||||||||||||||||||||||| | ||| |||||||||||||||| |||||||||| |
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| T |
221245 |
ggcccaaatccaatcgctcccaacagagctagaaattgattgaaaaatggcattgccatggcaagaatggttgctagtatcacaaatatcgtcctccaaa |
221344 |
T |
|
| Q |
443 |
ttaacctaaacaagttcaagttgattgttacaccgcaca |
481 |
Q |
| |
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| T |
221345 |
ttaacctaaacaagttcaacttgattgttgcaccgcaca |
221383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 153 - 481
Target Start/End: Complemental strand, 244142 - 243814
Alignment:
| Q |
153 |
ctattgtttgtaagcaaaaatcttgaatttgtgaagatttttgctaatttcatgaattgaagcaactacagctgccaatgaaacaaggaaacatacacaa |
252 |
Q |
| |
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||||||||| |||| |||||||||| || | ||| |||| | ||||||||||||||||||||||| |||| |||||||| |||| | ||| | ||| |
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| T |
244142 |
ctattgtttataagaaaaaatcttgtatgttcgaatatttgcgataatttcatgaattgaagcaactgcagcggccaatgagacaatcatacaaaaccaa |
244043 |
T |
|
| Q |
253 |
ttcaaacattgaagggcacaccacctaagtgacattggtcttatacccttctgagcaatatgcatttgtataggaaagaagacaactaaaggaccaaacc |
352 |
Q |
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|||||| ||| || ||||||||||| | ||| | ||| | ||| |||||||||||||||||||| || |||||||||||||| || ||||| | |
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| T |
244042 |
ttcaaaagttggagtgcacaccacctcaatgataacacgggtatgcgcttttgagcaatatgcatttgtatggggaagaagacaactaatggcccaaatc |
243943 |
T |
|
| Q |
353 |
caattgctccaagcagagcaagaatttgattgaaaaatggcattgccatggcaagagttgttcctagtatcacaaatattgtcctccaaattaacctaaa |
452 |
Q |
| |
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|||| ||||| | ||| | |||| | |||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||| |||||| |
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| T |
243942 |
caatcgctcccaagagacctagaaaataattgaaaaatggcattgccatggcaagaactgttcctacaatcacaaatatcgtcctccaaattagcctaaa |
243843 |
T |
|
| Q |
453 |
caagttcaagttgattgttacaccgcaca |
481 |
Q |
| |
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||||||||| ||||||||| |||| |||| |
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| T |
243842 |
caagttcaaattgattgttgcaccacaca |
243814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 358 - 465
Target Start/End: Complemental strand, 258721 - 258614
Alignment:
| Q |
358 |
gctccaagcagagcaagaatttgattgaaaaatggcattgccatggcaagagttgttcctagtatcacaaatattgtcctccaaattaacctaaacaagt |
457 |
Q |
| |
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|||||||| || ||||| |||| ||||||||| ||||||||||| || ||| | || ||| | | |||||||| || |||||||||| |||||| |||| |
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| T |
258721 |
gctccaagaagtgcaagcatttcattgaaaaagggcattgccatagccagaatagtcactattgtgacaaatatggttctccaaattagcctaaataagt |
258622 |
T |
|
| Q |
458 |
tcaagttg |
465 |
Q |
| |
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|||||||| |
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|
| T |
258621 |
tcaagttg |
258614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 577 - 620
Target Start/End: Original strand, 221884 - 221927
Alignment:
| Q |
577 |
tgatatgctccaatcatgtggattacaatgcatatatctccaat |
620 |
Q |
| |
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|||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
221884 |
tgatatgctccaatcatgtggattacgatgcatacttctccaat |
221927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 472
Target Start/End: Complemental strand, 51530432 - 51530342
Alignment:
| Q |
382 |
ttgaaaaatggcattgccatggcaagagttgttcctagtatcacaaatattgtcctccaaattaacctaaacaagttcaagttgattgtta |
472 |
Q |
| |
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||||| ||||||||||||||||||| | ||| | | |||||||||||||||||||||||||| ||||| ||||| | ||||| ||||| |
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| T |
51530432 |
ttgaagaatggcattgccatggcaataactgtggccattatcacaaatattgtcctccaaattagtctaaataagttgatgttgaatgtta |
51530342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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