View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7498_low_4 (Length: 528)
Name: NF7498_low_4
Description: NF7498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7498_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 504; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 1 - 516
Target Start/End: Original strand, 3203629 - 3204144
Alignment:
| Q |
1 |
gtgtggagggaaaatgattgacatgggtgttaacgataacacagctagcataacatcttacttgttagaaatttcaagatatataaattaaggtactttg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3203629 |
gtgtggagggaaaatgattgacatgggtgttaacgataacacagctagcatagcatcttacttgttaaaaatttcaagatatataaattaaggtactttg |
3203728 |
T |
|
| Q |
101 |
catggtgaagtacgctgttcacaaacggtggcgttattagacactattcacatacataggatacgatggcatgtgctcctgcttaaattttgatttgcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3203729 |
catggtgaagtacgctgttcacaaacggtggcgttattagacactattcacatacataggatacgatggcatgtgctcctgcttaaattttgatttgcat |
3203828 |
T |
|
| Q |
201 |
gcatgtgtcgtttatagatttagcatcaagtcttgcctatgcatttcaatgcattttcttctgttttttggacaaaaattatatgccttttctaatacaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3203829 |
gcatgtgtcgtttatagatttagcatcaagtcttgcctatgcatttcaatgcattttcttctgttttttggacaaaaaatatatgccttttctaatacaa |
3203928 |
T |
|
| Q |
301 |
aattctttccttgtatatatataagcccaaaattaaattcattcctcttgaagcactgtttggattgttacaattgggtcagcgttatccgtatctttct |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3203929 |
aattctttccttgtatatatataagcccaaaattaaattcattcctcttgaagcactgtttggattgttacaattgggtcagcgttatccgtatctttct |
3204028 |
T |
|
| Q |
401 |
tgaactacaaaggtgaaaattataaagtattagctacaacctcattgcataaagtatactttaatttttatcatattcttacttacaattatgaaaccag |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3204029 |
tgaactacaaaggtgaaaattataaagtattagctacaacctcattgcataaagtatactttaatttttatcatattcttacttacaattatgaaaccag |
3204128 |
T |
|
| Q |
501 |
ctagtggcataatatt |
516 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
3204129 |
ctagtggcataatatt |
3204144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 3209603 - 3209709
Alignment:
| Q |
1 |
gtgtggagggaaaatgattgacatgggtgttaacgataacacagctagcataacatcttacttgttagaaatttcaagatatataaattaaggtactttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3209603 |
gtgtggagggaaaatgattgacatgggtgttaacgataacacagctagcatagcatcttacttgttagaaatttcaagatatataaattaaggtac-ttg |
3209701 |
T |
|
| Q |
101 |
catggtga |
108 |
Q |
| |
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|||||||| |
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| T |
3209702 |
catggtga |
3209709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 178 - 291
Target Start/End: Complemental strand, 3509045 - 3508930
Alignment:
| Q |
178 |
cctgcttaaattttgatttgcatgcatgtgtcgtttatagatttagcatcaagtcttgcctatgcatttcaatgcattttcttct--gttttttggacaa |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||| | |
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| T |
3509045 |
cctgcttaaattttgatttgcatgcatgtgtcatttatagatttagcatcaagtctggcctatgtatttcaatgcattttcttctccattttttggacta |
3508946 |
T |
|
| Q |
276 |
aaattatatgcctttt |
291 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
3508945 |
aaattatatgcctttt |
3508930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 347 - 461
Target Start/End: Complemental strand, 3512603 - 3512485
Alignment:
| Q |
347 |
cttgaagcactgtttggattgttacaattggg-tcagcgttatccgtatctttcttgaactacaaaggtgaaaat--tataaagtattagctacaacctc |
443 |
Q |
| |
|
|||||||||||||| ||||||||||||||| | ||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3512603 |
cttgaagcactgttaggattgttacaattgagatcagcattatccgtatctttcttaaactacaaaggtgaaaatcatataaagtattagctacaacctc |
3512504 |
T |
|
| Q |
444 |
attgcataaa-gtatactt |
461 |
Q |
| |
|
|||||||||| |||||||| |
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|
| T |
3512503 |
attgcataaatgtatactt |
3512485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 344 - 453
Target Start/End: Original strand, 3651177 - 3651289
Alignment:
| Q |
344 |
cctcttgaagcactgtttggattgttacaattggg-tcagcgttatccgtatctttcttgaactacaaaggtgaaaat--tataaagtattagctacaac |
440 |
Q |
| |
|
||||||||||| ||||||| |||||||| |||| | ||| | |||| ||||| |||||||||| |||| ||||||||| ||||||||||||||| |||| |
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|
| T |
3651177 |
cctcttgaagcgctgtttgaattgttaccattgagatcaccattattcgtatatttcttgaaccacaacggtgaaaattatataaagtattagcttcaac |
3651276 |
T |
|
| Q |
441 |
ctcattgcataaa |
453 |
Q |
| |
|
| |||||||||| |
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|
| T |
3651277 |
attattgcataaa |
3651289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 385 - 447
Target Start/End: Complemental strand, 3500382 - 3500318
Alignment:
| Q |
385 |
ttatccgtatctttcttgaactacaaaggtgaaaattata--aagtattagctacaacctcattg |
447 |
Q |
| |
|
|||| |||||||| ||||||| |||||||||||| ||||| ||||||||||||||||||||||| |
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|
| T |
3500382 |
ttattcgtatcttacttgaaccacaaaggtgaaagttatacaaagtattagctacaacctcattg |
3500318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 462 - 516
Target Start/End: Complemental strand, 3512457 - 3512403
Alignment:
| Q |
462 |
taatttttatcatattcttacttacaattatgaaaccagctagtggcataatatt |
516 |
Q |
| |
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||||||| |||||||||||| ||||||||| |||| ||| ||||||| ||||||| |
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|
| T |
3512457 |
taattttaatcatattcttaattacaattacgaaatcagatagtggcgtaatatt |
3512403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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