View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7498_low_5 (Length: 445)
Name: NF7498_low_5
Description: NF7498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7498_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 262
Target Start/End: Complemental strand, 2250313 - 2250070
Alignment:
| Q |
19 |
ctgtgtataataaataatgcatttgatgtataaattaaacatgaatgcatgtatatgattaataaccttgcagattttagggttggataaatatttatgg |
118 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2250313 |
ctgtgtataataaataatgcatttgatgtataatttaaacatgaatgcatgtatatgattaataaccttgcagattttagggttggataaatatttatgg |
2250214 |
T |
|
| Q |
119 |
gtgtctactctctccggacattaacgtacattgtattatcttgttttccctttgctgataaatatttatttttgagagatgtagtttaaatagttgcaga |
218 |
Q |
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||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2250213 |
gtgtctactctctgcggacattaatgtacattgtattatcttgttttccctttgctgataaatatttatttttgagagatgtagtttaaatagttgcaga |
2250114 |
T |
|
| Q |
219 |
actacaattaacgtcaccattattaataataattttcttgtttt |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2250113 |
actacaattaacgtcaccattattaataataattttcttgtttt |
2250070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 263 - 436
Target Start/End: Original strand, 21806667 - 21806840
Alignment:
| Q |
263 |
tattatggaaatgagaaagtgaaaatagctttcattcaacataacagaaaaggagagtacaatgggtatttatagagatgaactaactctctaatgatat |
362 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
21806667 |
tattattgaaatgagaaagtgaaaatagctttcattcaacataacataaaaggagagtacaatgagtatttatagagatgaactaactctctaattatat |
21806766 |
T |
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| Q |
363 |
gctaattacaagattaaactatataactagaatctcaagtaacagctggaatatcttggctttgttgttcttct |
436 |
Q |
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| T |
21806767 |
gctaattacaagattaaactatataactagaatctcaagtaacagttggaatatcttggctttgttgttcttct |
21806840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 263 - 413
Target Start/End: Original strand, 21811347 - 21811497
Alignment:
| Q |
263 |
tattatggaaatgagaaagtgaaaatagctttcattcaacataacagaaaaggagagtacaatgggtatttatagagatgaactaactctctaatgatat |
362 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
21811347 |
tattattgaaatgagaaagtgaaaatagctttcattcaacgtaacataaaagaagagtacaatgggtatttatagagatgaactaactctctaattatat |
21811446 |
T |
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| Q |
363 |
gctaattacaagattaaactatataactagaatctcaagtaacagctggaa |
413 |
Q |
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| T |
21811447 |
gctaattacaagattaaactatataactagaatctcaagtaacagctggaa |
21811497 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 257 - 436
Target Start/End: Complemental strand, 16989309 - 16989114
Alignment:
| Q |
257 |
tgtttttattatggaaatgagaaagtgaaaatagctttcattcaacataacagaaaaggagagtacaatgggtatttatagagatgaactaact------ |
350 |
Q |
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|
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
16989309 |
tgtttttattattgaaatgagaaagtgaaaatagctttcattcaacatagcagaaaaggagagtacaataggtatttatagagatgaactaactgaccag |
16989210 |
T |
|
| Q |
351 |
----------ctctaatgatatgctaattacaagattaaactatataactagaatctcaagtaacagctggaatatcttggctttgttgttcttct |
436 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16989209 |
agtaattactctctaattatatgctaattacaagattaaactatataactagaatctcaagtaacagctggaatatcttggctttgttgttcttct |
16989114 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 263 - 436
Target Start/End: Complemental strand, 16984604 - 16984415
Alignment:
| Q |
263 |
tattatggaaatgagaaagtgaaaatagctttcattcaacataacagaaaaggagagtacaatgggtatttatagagatgaactaact------------ |
350 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||| ||||| |
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| T |
16984604 |
tattattgaaatgagaaagtgaaaatagctttcattcaacatagcagaaaagaagagtacaataggtatttatagagatgatttaactgaccagagtaat |
16984505 |
T |
|
| Q |
351 |
----ctctaatgatatgctaattacaagattaaactatataactagaatctcaagtaacagctggaatatcttggctttgttgttcttct |
436 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
16984504 |
tactctctaattatatgctaattacaagattaaactatataactagaatctcaagtaacagctggaatatctttgctttgttgttcttct |
16984415 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 263 - 436
Target Start/End: Complemental strand, 46677545 - 46677355
Alignment:
| Q |
263 |
tattatggaaatgagaaagtgaaaa-tagctttcattcaacataacagaaaaggagagtacaatgggtatttatagagatgaactaa------------- |
348 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
46677545 |
tattatggaaatgagaaagtgaaaaatagctt-cattcaacacaacagaaaatgagagtacaatgggtatttatagagatgaactaaactaaccagagta |
46677447 |
T |
|
| Q |
349 |
----ctctctaatgatatgctaattacaagattaaactatataactagaatctcaagtaacagctggaatatcttggctttgttgttcttct |
436 |
Q |
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||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46677446 |
gttactctctaattataagctaattacaagattaaactatataactagtatctcaagtaacagctggaatatcttggctttgttgttcttct |
46677355 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 263 - 341
Target Start/End: Complemental strand, 5890213 - 5890136
Alignment:
| Q |
263 |
tattatggaaatgagaaagtgaaaatagctttcattcaacataacagaaaaggagagtacaatgggtatttatagagat |
341 |
Q |
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||||||| ||||||||||||||||||||| |||||||||||| | | ||| ||||||||||| ||||||||||||||| |
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| T |
5890213 |
tattatgcaaatgagaaagtgaaaatagc-ttcattcaacatgattgtaaatgagagtacaataggtatttatagagat |
5890136 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 348 - 436
Target Start/End: Complemental strand, 5890112 - 5890024
Alignment:
| Q |
348 |
actctctaatgatatgctaattacaagattaaactatataactagaatctcaagtaacagctggaatatcttggctttgttgttcttct |
436 |
Q |
| |
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|||||||||| ||| |||||||||| ||||||| || |||||| | ||||||||||| || | |||| ||| |||||||||||||||| |
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| T |
5890112 |
actctctaattataagctaattacatgattaaattagataacttgtatctcaagtaatagattgaatggctttgctttgttgttcttct |
5890024 |
T |
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