View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7498_low_6 (Length: 436)
Name: NF7498_low_6
Description: NF7498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7498_low_6 |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: scaffold0060 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 17 - 417
Target Start/End: Complemental strand, 63924 - 63526
Alignment:
| Q |
17 |
tttgatcgatttgaagagattttaggaggctaaaggggttgttgagaagatggttttgaaaggttttgtggtgagttatgattcttttaagggtttggtt |
116 |
Q |
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| T |
63924 |
tttgattgatttgaagagattttaggaggctaaaggggttgttgagaagatggttttgaaaggtttagtggtgagttatgattcttttaagggtttggtt |
63825 |
T |
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| Q |
117 |
ttggggttttgtagagagggtttggttgaggatgttgattggggtgttaggagtgtggttaggatggtgggatttgttgttaagatggggatgtggagac |
216 |
Q |
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| T |
63824 |
ttggggttttgtagagagggtttggttgaggatgttgattggggtgttaggagtatggttgggatggtgggatttgttgtta----ggggatgtggagtc |
63729 |
T |
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| Q |
217 |
aaattgttaagtttgttgttgtttctagtgatgtttgtgtttctcttgatacgattttggattgtcatgatgattgaaaaatatgatattggtgg---nn |
313 |
Q |
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| T |
63728 |
aaattgttaagtttg-tgttgtttctagtgatgtttgtgtttctcttgatacgattttggatggtcatgatgattgaaaaatatgatgttggtggttttt |
63630 |
T |
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| Q |
314 |
nnnnnnncaatgtacattattatatagccaataacatgttttgattaatttgattggaaggaaaaagaataattattcggctatatcgtaagtgtgatct |
413 |
Q |
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| T |
63629 |
tttttttcaatgtacattattatatagccaataacatgttttgattaatttgattggaaggaaaaagaataattattcggctatatcgtaagtgtgatct |
63530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 17 - 279
Target Start/End: Original strand, 30301000 - 30301259
Alignment:
| Q |
17 |
tttgatcgatttgaagagattttaggaggctaaaggggttgttgagaagatggttttgaaaggttttgtggtgagttatgattcttttaagggtttggtt |
116 |
Q |
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| T |
30301000 |
tttgattgatttgaagagatttgaggaggctaaaggggttgttgagaagatggttttgaagggttttgtggtgagttatgattcttttaagggtttggtt |
30301099 |
T |
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| Q |
117 |
ttggggttttgtagagagggtttggttgaggatgttgattggggtgttaggagtgtggttaggatggtgggatttgttgttaagatggggatgtggagac |
216 |
Q |
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| T |
30301100 |
ttggggttttgtagagaagggttgattgaggaagttgattggggtgttaggagtatggttagga---tgggttttgttcctaggatggggatgtggagac |
30301196 |
T |
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| Q |
217 |
aaattgttaagtttgttgttgtttctagtgatgtttgtgtttctcttgatacgattttggatt |
279 |
Q |
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| T |
30301197 |
caattgttagatgtattgttgtttctagagatgttagtgtttcttttgataagattttggatt |
30301259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 225 - 311
Target Start/End: Original strand, 30302187 - 30302273
Alignment:
| Q |
225 |
aagtttgttgttgtttctagtgatgtttgtgtttctcttgatacgattttggattgtcatgatgattgaaaaatatgatattggtgg |
311 |
Q |
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| T |
30302187 |
aagtgtgttgttgctgttagtgatgtttgtgtttctcttgatacgattttggatagtcatgatgattgaaaaatatgatgttggtgg |
30302273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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