View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7498_low_8 (Length: 385)
Name: NF7498_low_8
Description: NF7498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7498_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 13 - 367
Target Start/End: Complemental strand, 46315421 - 46315067
Alignment:
| Q |
13 |
aatatataggggacttgcacaatgcagcgacatgtagaaccaacagatttacagactttatcttacaatctgatggttctatatgtctctgcaaagtgtt |
112 |
Q |
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| T |
46315421 |
aatatataggggacttgcacaatgcagcgacatgtagaaccaacagatttacagactttatcttacaatctgatggttctatatgtctctgcaaagtgtt |
46315322 |
T |
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| Q |
113 |
gtgtatttagaagatccatacacataacttaagcatgaaagacacctaccaacgctagcggttttgaaggtaccgactccatcaatgaagtttttattgc |
212 |
Q |
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| T |
46315321 |
gtgtatttagaagatccatacacataatttaagcatgaaaaacacctaccaacgctagcggttttgaaggtaccaactccatcaatgaagtttttattgc |
46315222 |
T |
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| Q |
213 |
ccgtaatgcgtgtctttctaccaccatcaccaatgaaaacaacgtgagtcatggttttagtaacttcaacatactctttataaacaccctccttgatgta |
312 |
Q |
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| T |
46315221 |
ccgtaatgcgtgtctttctaccaccatcaccgatgaaaacaacgtgagtcatggttttagtaacttcaacatactctttataaacaccctccttgatgta |
46315122 |
T |
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| Q |
313 |
aataacaaatggcttcaagtttttcttgggaacatgcttaagagcctcagtgatt |
367 |
Q |
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| T |
46315121 |
aataacaaatggcttcaagtttttcttgggaacatgcttaagagcctcagtgatt |
46315067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 190 - 321
Target Start/End: Original strand, 37162940 - 37163071
Alignment:
| Q |
190 |
tccatcaatgaagtttttattgcccgtaatgcgtgtctttctaccaccatcaccaatgaaaacaacgtgagtcatggttttagtaacttcaacatactct |
289 |
Q |
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| T |
37162940 |
tccatctataaaatttttgttgccagtaattcttgtcttgttgccaccatcacccaaaaacacaacatgagtcattttcttagtaacttcaacatactca |
37163039 |
T |
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| Q |
290 |
ttataaacaccctccttgatgtaaataacaaa |
321 |
Q |
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| T |
37163040 |
tgataaacaccctccttgatatgaataacaaa |
37163071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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