View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7499_low_1 (Length: 630)

Name: NF7499_low_1
Description: NF7499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7499_low_1
NF7499_low_1
[»] chr1 (1 HSPs)
chr1 (1-630)||(46452320-46452950)
[»] chr8 (1 HSPs)
chr8 (233-300)||(9443446-9443514)
[»] chr6 (2 HSPs)
chr6 (233-300)||(27878063-27878131)
chr6 (248-311)||(8480149-8480213)
[»] chr5 (2 HSPs)
chr5 (233-300)||(41719305-41719373)
chr5 (235-300)||(34352910-34352976)
[»] chr4 (3 HSPs)
chr4 (233-300)||(42266798-42266866)
chr4 (233-300)||(48701175-48701243)
chr4 (233-300)||(30949537-30949605)
[»] chr3 (2 HSPs)
chr3 (233-300)||(5822629-5822697)
chr3 (233-300)||(2816617-2816685)
[»] chr2 (1 HSPs)
chr2 (233-300)||(826374-826442)


Alignment Details
Target: chr1 (Bit Score: 595; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 1 - 630
Target Start/End: Original strand, 46452320 - 46452950
Alignment:
Q  1 ttctctttgaggtttttcttagttttaatttttaagatagggagagtaattattcactcctatggcatgatttgatgaatttgtacaaatgcataatact 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46452320 ttctctttgaggtttttcttagttttaatttttaagagagggagagtaattattcactcctatggcatgatttgatgaatttgtacaaatgcataatact 46452419  T
Q  101 tgacaataaaatactctattagagagggtataacacccttcgaatgagtgaaaacaaataaataacaaagcacatgaacaccttggatacacaatttgtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  46452420 tgacaataaaatactctattagagagggtataacacccttcgaatgagtgaaaacaagtaaataacaaagcacatgaacaccttggatacacaatttgtt 46452519  T
Q  201 tagcttaacattttcatacttcaaagcagtgaaaaatgagtgtgctaaacttctacttcatagtttattagatcctatgatgaactcatcatcaacatta 300  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46452520 tagcttaacattttcatatttcaaagcagtgaaaaatgagtgtgctaaacttctacttcatagtttattagatcctatgatgaactcatcatcaacatta 46452619  T
Q  301 aaaacaacaatgtagttaatactctagtttggtgacgcgtttggtgcaatccttaaagaagaatcaacagagcgcactaatcagagccaaaatgtagttg 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  46452620 aaaacaacaatgtagttaatactctagtttggtgacgcgtttggtgcaattcttaaagaagaatcaacagagcgcactaatcagagccaaaatgtagttg 46452719  T
Q  401 atctaaatctcaaatgttacaaatgtggtagaaagcacttaaaacgggagtgttacggtacctcaaatgaaggtggaatcctatacaacaaagcagctag 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  46452720 atctaaatctcaaatgttacaaatgtggtagaaagcacttaaaacgggagtgttacggtacctcaaatgaaggtggaaccctatacaacaaagcagctag 46452819  T
Q  501 ttctaaaggcgaaatataaatattattctcttattgtcttccccaaaacaaaacaagataaactagtacatgtgactaggtctggtctggtgatgatata 600  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  46452820 ttctaaaggcgaaatataaatattatactcttattgtcttccccaaaacaaaacaagataaactagtagatgtgactaggtctggtctggtgatgatata 46452919  T
Q  601 agtagttttgtattga-gctttggtgtactt 630  Q
    |||||||||||||||| ||||||||||||||    
T  46452920 agtagttttgtattgaggctttggtgtactt 46452950  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 233 - 300
Target Start/End: Complemental strand, 9443514 - 9443446
Alignment:
Q  233 aaaatgagtgtgctaaacttctacttcatagtttattaga-tcctatgatgaactcatcatcaacatta 300  Q
    |||||||| ||||| ||||||||||||| ||||||  ||| || |||||| ||||||||||||||||||    
T  9443514 aaaatgagcgtgctgaacttctacttcagagtttaccagattcgtatgatcaactcatcatcaacatta 9443446  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 233 - 300
Target Start/End: Complemental strand, 27878131 - 27878063
Alignment:
Q  233 aaaatgagtgtgctaaacttctacttcatagtttattaga-tcctatgatgaactcatcatcaacatta 300  Q
    |||||||| ||||| ||||||||||||| ||||||  ||| || |||||| ||||||||||||||||||    
T  27878131 aaaatgagcgtgctgaacttctacttcagagtttaccagattcgtatgatcaactcatcatcaacatta 27878063  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 248 - 311
Target Start/End: Complemental strand, 8480213 - 8480149
Alignment:
Q  248 aacttctacttcatagtttattagatcc-tatgatgaactcatcatcaacattaaaaacaacaat 311  Q
    ||||||||||||| ||||||   ||| | |||||| |||||||||||||||||| ||||||||||    
T  8480213 aacttctacttcagagtttacctgattcatatgatcaactcatcatcaacattacaaacaacaat 8480149  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 233 - 300
Target Start/End: Original strand, 41719305 - 41719373
Alignment:
Q  233 aaaatgagtgtgctaaacttctacttcatagtttattaga-tcctatgatgaactcatcatcaacatta 300  Q
    |||||||| ||||| ||||||||||||| ||||||  ||| || |||||| ||||||||||||||||||    
T  41719305 aaaatgagcgtgctgaacttctacttcagagtttaccagattcgtatgatcaactcatcatcaacatta 41719373  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 235 - 300
Target Start/End: Original strand, 34352910 - 34352976
Alignment:
Q  235 aatgagtgtgctaaacttctacttcatagtttattaga-tcctatgatgaactcatcatcaacatta 300  Q
    |||||| ||||| ||||||||||||| ||||||  ||| || |||||| ||||||||||||||||||    
T  34352910 aatgagcgtgctgaacttctacttcagagtttaccagattcgtatgatcaactcatcatcaacatta 34352976  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 233 - 300
Target Start/End: Original strand, 42266798 - 42266866
Alignment:
Q  233 aaaatgagtgtgctaaacttctacttcatagtttattaga-tcctatgatgaactcatcatcaacatta 300  Q
    |||||||| ||||| ||||||||||||| ||||||  ||| || |||||| ||||||||||||||||||    
T  42266798 aaaatgagcgtgctgaacttctacttcagagtttaccagattcgtatgatcaactcatcatcaacatta 42266866  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 233 - 300
Target Start/End: Complemental strand, 48701243 - 48701175
Alignment:
Q  233 aaaatgagtgtgctaaacttctacttcatagtttattaga-tcctatgatgaactcatcatcaacatta 300  Q
    |||||||| ||||| ||||||||||||| ||||||  ||| || |||||| ||||||||||||||||||    
T  48701243 aaaatgagcgtgctgaacttctacttcagagtttaccagattcgtatgatcaactcatcatcaacatta 48701175  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 233 - 300
Target Start/End: Complemental strand, 30949605 - 30949537
Alignment:
Q  233 aaaatgagtgtgctaaacttctacttcatagtttattagatcc-tatgatgaactcatcatcaacatta 300  Q
    |||||||| ||||| |||||||||| || ||||||  |||| | |||||| ||||||||||||||||||    
T  30949605 aaaatgagcgtgctgaacttctactccagagtttaccagattcgtatgatcaactcatcatcaacatta 30949537  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 233 - 300
Target Start/End: Complemental strand, 5822697 - 5822629
Alignment:
Q  233 aaaatgagtgtgctaaacttctacttcatagtttattaga-tcctatgatgaactcatcatcaacatta 300  Q
    |||||||| ||||| ||||||||||||| ||||||  ||| || |||||| ||||||||||||||||||    
T  5822697 aaaatgagcgtgctgaacttctacttcagagtttaccagattcgtatgatcaactcatcatcaacatta 5822629  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 233 - 300
Target Start/End: Complemental strand, 2816685 - 2816617
Alignment:
Q  233 aaaatgagtgtgctaaacttctacttcatagtttattagatcc-tatgatgaactcatcatcaacatta 300  Q
    |||||||| ||||| ||||||||||| | ||||||  |||| | |||||| ||||||||||||||||||    
T  2816685 aaaatgagcgtgctgaacttctactttagagtttaccagattcgtatgatcaactcatcatcaacatta 2816617  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 233 - 300
Target Start/End: Original strand, 826374 - 826442
Alignment:
Q  233 aaaatgagtgtgctaaacttctacttcatagtttattaga-tcctatgatgaactcatcatcaacatta 300  Q
    |||||||| ||||| ||||||||||||| ||||||  ||| || |||||| ||||||||||||||||||    
T  826374 aaaatgagcgtgctgaacttctacttcagagtttaccagattcgtatgatcaactcatcatcaacatta 826442  T

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