View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7501_high_2 (Length: 288)
Name: NF7501_high_2
Description: NF7501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7501_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 5e-93; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 47185776 - 47185600
Alignment:
| Q |
15 |
tcactgatgagtaaagtgaagcatcattgtgaaatcccaaagtgttgaacaatactggagcatagaacatgattgcattgatgccggtgaattgttggaa |
114 |
Q |
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| T |
47185776 |
tcactgatgagtaaagtgaagcatcattgtgaaatcccaaagtgttgaacaatactggagcatagaacatgattgcattgatgccggtgaattgttggaa |
47185677 |
T |
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| Q |
115 |
gacctttaccaagagaaaatacaagttttttcagaacatcaattaaaccaaatactataggtgattaaaatgtacaa |
191 |
Q |
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| T |
47185676 |
gacctttaccaagagaaaatacaagttttttcagaacatcaatcaaaccaaatactataggtgattaaaatgtacaa |
47185600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 47198315 - 47198211
Alignment:
| Q |
15 |
tcactgatgagtaaagtgaagcatcattgtgaaatcccaaagtgttgaacaatactggagcatagaacatgattgcattgatgccggtgaattgttggaa |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
47198315 |
tcactgatgagtaaagtgaagcatcattgtgaaatcccagagtgctgaacaatactggagcatagaacatgattgcattgatgccggtgcattgctggaa |
47198216 |
T |
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| Q |
115 |
gacct |
119 |
Q |
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||||| |
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| T |
47198215 |
gacct |
47198211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 23 - 108
Target Start/End: Complemental strand, 47212396 - 47212311
Alignment:
| Q |
23 |
gagtaaagtgaagcatcattgtgaaatcccaaagtgttgaacaatactggagcatagaacatgattgcattgatgccggtgaattg |
108 |
Q |
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| T |
47212396 |
gagtaaagtgcagcatcattcttaaatcctaaggtgttgaacagaactggagcatagaacattatcgcattgatgccagtgaattg |
47212311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 245
Target Start/End: Complemental strand, 47185361 - 47185324
Alignment:
| Q |
208 |
attatttatttgtcctctaattcaatcgtagttgaact |
245 |
Q |
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| T |
47185361 |
attatttatttgacctctaattcaatcgtagttgaact |
47185324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 114
Target Start/End: Original strand, 748904 - 748986
Alignment:
| Q |
32 |
gaagcatcattgtgaaatcccaaagtgttgaacaatactggagcatagaacatgattgcattgatgccggtgaattgttggaa |
114 |
Q |
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||||||||||| | ||||||| || |||||||| ||||| ||||| |||||||| || |||||||| |||||||||||||| |
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| T |
748904 |
gaagcatcattcttgaatcccactgtattgaacaaaactggtgcataaaacatgatcgcgttgatgcctgtgaattgttggaa |
748986 |
T |
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