View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7502_low_2 (Length: 210)
Name: NF7502_low_2
Description: NF7502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7502_low_2 |
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| [»] scaffold0691 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 127; Significance: 9e-66; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 14 - 193
Target Start/End: Original strand, 11115453 - 11115632
Alignment:
| Q |
14 |
atatataacagaatgaatagtgaaaacgtcgggaattgtaaagataaataagagaatcattgtttgatcggaggaaaggtaccttcnnnnnnngaatcta |
113 |
Q |
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| T |
11115453 |
atatataagagaaagaatagtgaaaaagtcgggaattgtaaagataaataagagaatcattatttgatcagaggaaaggtaccttcttcttttgaagcta |
11115552 |
T |
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| Q |
114 |
gctagacaccttagcattctcagttgctcaggactccctggaggatgagttaatagtgcgaatctcataatcatagaatt |
193 |
Q |
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| T |
11115553 |
gctagacaccttagcattctcagttgttcaggactccttggaggatgagttaatagtgcgaatctcataatcatagaatt |
11115632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 11115383 - 11115432
Alignment:
| Q |
14 |
atatataacagaatgaatagtgaaaacgtcgggaattgtaaagataaata |
63 |
Q |
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| T |
11115383 |
atatataagagaaagaatagtgaaaaactcgggagttgtaaagataaata |
11115432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 2e-26; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 52 - 189
Target Start/End: Original strand, 2836328 - 2836465
Alignment:
| Q |
52 |
taaagataaataagagaatcattgtttgatcggaggaaaggtaccttcnnnnnnngaatctagctagacaccttagcattctcagttgctcaggactccc |
151 |
Q |
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| T |
2836328 |
taaagataaataagagaagcattgcgcgatcagaggagaggtaccttcttgttttgaagcttgctagacaccatagcattctcaattgctcaggactcct |
2836427 |
T |
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| Q |
152 |
tggaggatgagttaatagtgcgaatctcataatcatag |
189 |
Q |
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| T |
2836428 |
tggaggacgagtttatggtgcgaatctcataatcatag |
2836465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 61 - 189
Target Start/End: Complemental strand, 2751399 - 2751271
Alignment:
| Q |
61 |
ataagagaatcattgtttgatcggaggaaaggtaccttcnnnnnnngaatctagctagacaccttagcattctcagttgctcaggactccct-ggaggat |
159 |
Q |
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| T |
2751399 |
ataagagaatcattgtgtgattagaggaaatgtacctttttcttttgaagctagctagacaccttagcattctcatct-ctcaggacttctttggtggat |
2751301 |
T |
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| Q |
160 |
gagttaatagtgcgaatctcataatcatag |
189 |
Q |
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| T |
2751300 |
gagttaatagtgcgaacctcataatcatag |
2751271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 126 - 193
Target Start/End: Original strand, 2853612 - 2853679
Alignment:
| Q |
126 |
agcattctcagttgctcaggactccctggaggatgagttaatagtgcgaatctcataatcatagaatt |
193 |
Q |
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| T |
2853612 |
agcattctctttagctcaggactccttggaggatgattttatagtgtgaatctcataatcatagaatt |
2853679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 45 - 99
Target Start/End: Complemental strand, 2799782 - 2799728
Alignment:
| Q |
45 |
ggaattgtaaagataaataagagaatcattgtttgatcggaggaaaggtaccttc |
99 |
Q |
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| T |
2799782 |
ggaattataaagataaataagagaagcattgcatgatcagaggaaaggtaccttc |
2799728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 3860 - 3922
Alignment:
| Q |
36 |
aaaacgtcgggaattgtaaagataaataagagaatcattgtttgatcggaggaaaggtacctt |
98 |
Q |
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| T |
3860 |
aaaatgtcaggaattgtaaagttaaatgagagaagctttctgtgatcggaggaaaggtacctt |
3922 |
T |
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