View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7503_high_14 (Length: 205)

Name: NF7503_high_14
Description: NF7503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7503_high_14
NF7503_high_14
[»] chr3 (1 HSPs)
chr3 (19-192)||(47828619-47828792)
[»] chr8 (2 HSPs)
chr8 (26-97)||(42788822-42788893)
chr8 (26-97)||(42798360-42798431)


Alignment Details
Target: chr3 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 47828792 - 47828619
Alignment:
Q  19 cttgagacatattagcaaagcaaatcctaaaccagccaggttcagaacaatgacaagaagatccaggagatatattcaaaccaatttggtaaagaatcct 118  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47828792 cttgagacatattagcaaagcaaatcctaaaccacccaggttcagaacaatgacaagaagatccaggagatatattcaaaccaatttggtaaagaatcct 47828693  T
Q  119 tttccaaagctcattctctgcctcaaaagttgcagaactcaataaatgcctcatatcaacccaacagaataatc 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  47828692 tttccaaagctcattctctgcctcaaaagttgcagaactcaataaatgcctcatatcaacccaacagaacaatc 47828619  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 42788822 - 42788893
Alignment:
Q  26 catattagcaaagcaaatcctaaaccagccaggttcagaacaatgacaagaagatccaggagatatattcaa 97  Q
    ||||||||||||||| |  |||||||| ||||||| |  ||||||||||||| | || ||||||||||||||    
T  42788822 catattagcaaagcagactctaaaccaaccaggttgatcacaatgacaagaacaccccggagatatattcaa 42788893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 42798360 - 42798431
Alignment:
Q  26 catattagcaaagcaaatcctaaaccagccaggttcagaacaatgacaagaagatccaggagatatattcaa 97  Q
    ||||||||||||||| |  |||||||| ||||||| |  ||||||||||||| | || ||||||||||||||    
T  42798360 catattagcaaagcagactctaaaccaaccaggttgatcacaatgacaagaacaccccggagatatattcaa 42798431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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