View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7503_high_5 (Length: 499)
Name: NF7503_high_5
Description: NF7503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7503_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 148 - 488
Target Start/End: Original strand, 44787427 - 44787763
Alignment:
| Q |
148 |
atgttcatataaaaacaaattgattaaagggaaagaaattatcattgttcataattaaatgacaataaatgtttgttacttcacttccaaatttcgaaat |
247 |
Q |
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| T |
44787427 |
atgttcatataaaaacaaattgattaaagggaaagaaattatcattgttcataattaaatgacaataaatgtttattacttcacttccaaatttcgaaat |
44787526 |
T |
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| Q |
248 |
gggattaattactatgtatgtaaagcttcttctaataataaaattaatgggatataaag-ttttcttttaaaaagaacaaatactataaagttgaacaat |
346 |
Q |
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| T |
44787527 |
ggg----attactatgtatgtaaagcttcttctaataataaaattaatgggatataaagtttttcttttaaaaagaacaaatactataaagttgaacaat |
44787622 |
T |
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| Q |
347 |
cttcttaaaaatagttaaacaaacaaaaatttactagtaacgggaacatatttggtataacgcccctagcnnnnnnnttgatcagtctatatgttagtag |
446 |
Q |
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| T |
44787623 |
cttcttaaaaataattaaacaaac-aaaatttactagtaacgggaacatatttggtataacgcccctagcaaaaaaattgatcagtctatatgttagtag |
44787721 |
T |
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| Q |
447 |
tttctctctctttgaaccagtcatttaatttcttcaattctt |
488 |
Q |
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| T |
44787722 |
tttctctctctttgaaccagtcctttaatttcttcaattctt |
44787763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 44787285 - 44787364
Alignment:
| Q |
5 |
attcttctcctttcttctccaagtacctcttcactgattctaaatccgtgatcctttcttctgtttttgccattgtgttg |
84 |
Q |
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| T |
44787285 |
attcttctcctttcttctccaagtacctcttcactgattctaaatccgtgatcctttcttctgtttttgccattgtgttg |
44787364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 44805880 - 44805922
Alignment:
| Q |
8 |
cttctcctttcttctccaagtacctcttcactgattctaaatc |
50 |
Q |
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| T |
44805880 |
cttctcctttctcctccaagtacctcttcgctgattccaaatc |
44805922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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