View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7503_high_6 (Length: 484)
Name: NF7503_high_6
Description: NF7503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7503_high_6 |
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| [»] scaffold0166 (5 HSPs) |
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Alignment Details
Target: scaffold0166 (Bit Score: 203; Significance: 1e-110; HSPs: 5)
Name: scaffold0166
Description:
Target: scaffold0166; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 241 - 475
Target Start/End: Complemental strand, 20619 - 20386
Alignment:
| Q |
241 |
aattaggatgaactagaatgaaacactttagtccttggtattctctagcctgtaattttaactatatgtgaaccagtgtattgtctgaagctacctgtgt |
340 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
20619 |
aattaggatgaactagaatgaaacactttc-tacttggtattctctagcctgtaattttaactatatgtgaaccagtgtattgtcttaagctacccgtgt |
20521 |
T |
|
| Q |
341 |
tttcattatctccctagaattgttgaagttgtcttatgccatgatacaatctggggtgaattggaaacatgggtttgagaattgctctatttaccatagg |
440 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
20520 |
tttcattctctccctagaattgttgaagttgtcttatgccatgatacaatctggggtgaattggaaacatgggtttgagaattgctctatttatcatagg |
20421 |
T |
|
| Q |
441 |
gtaatgtcatgatttttatcttctcctagtattat |
475 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
20420 |
gtaatgtcatgatttttatcttctcctagtattat |
20386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0166; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 20891 - 20683
Alignment:
| Q |
1 |
tatattaacttataacataacatttgtgtccatttttatctgcagggaaaagaaagtttgattaggattttctcccaaaaagtattccgatgcaagaacc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
20891 |
tatattaacttataacataacatttgtgtccatttttatctgcagggcaaagaaagtttgattatgattttctcccaaaaagtattccgatgcaagaacc |
20792 |
T |
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| Q |
101 |
cagattttttaccgattctattctcggcagggcgtgatggtttcaatcgcagaatgagtggaatctcaattggaatacatgtaaggggattgccattcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20791 |
cagattttttaccgattctattctcggcagggcgtgatggtttcaatcgcagaatgagtggaatctcaattggaatacatgtaaggggattgccattcac |
20692 |
T |
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| Q |
201 |
aagaagaaa |
209 |
Q |
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||||||||| |
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| T |
20691 |
aagaagaaa |
20683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0166; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 31 - 243
Target Start/End: Original strand, 33492 - 33702
Alignment:
| Q |
31 |
catttttatctgcagggaaaagaaagtttgattaggattttctcccaaaaagtattccgatgcaagaacccagattttttaccgattctattctcggcag |
130 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33492 |
catttttatctgcagggcaaagaaagtttgattaggattttctcccaaaaagtattccgatgcaagaacccagattttttaccgattctattctcggcag |
33591 |
T |
|
| Q |
131 |
ggcgtgatggtttcaatcgcagaatgagtggaatctcaattggaatacatgtaaggggattgccattcacaagaagaaaaacatatgaactcacatttct |
230 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
33592 |
ggcgtgatggtttcaatcgcagaatgagtggaatctctattggaatacatgtaaggggattgccattcacaagaag--aaacatatgaactcacatttct |
33689 |
T |
|
| Q |
231 |
ttctaaaaccaat |
243 |
Q |
| |
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||||||||||||| |
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| T |
33690 |
ttctaaaaccaat |
33702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0166; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 325 - 431
Target Start/End: Original strand, 33912 - 34010
Alignment:
| Q |
325 |
ctgaagctacctgtgttttcattatctccctagaattgttgaagttgtcttatgccatgatacaatctggggtgaattggaaacatgggtttgagaattg |
424 |
Q |
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||||||||||| ||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33912 |
ctgaagctaccggtgttttcattctctccctagaattgttgaggttg--------catgatacaatctggggtgaattggaaacatgggtttaagaattg |
34003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0166; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 289
Target Start/End: Original strand, 33746 - 33794
Alignment:
| Q |
241 |
aattaggatgaactagaatgaaacactttagtccttggtattctctagc |
289 |
Q |
| |
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||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
33746 |
aattaggatgaactagaatgaaacactttctccctcggtattctctagc |
33794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 203; Significance: 1e-110; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 241 - 475
Target Start/End: Complemental strand, 24778236 - 24778003
Alignment:
| Q |
241 |
aattaggatgaactagaatgaaacactttagtccttggtattctctagcctgtaattttaactatatgtgaaccagtgtattgtctgaagctacctgtgt |
340 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
24778236 |
aattaggatgaactagaatgaaacactttc-tacttggtattctctagcctgtaattttaactatatgtgaaccagtgtattgtcttaagctacccgtgt |
24778138 |
T |
|
| Q |
341 |
tttcattatctccctagaattgttgaagttgtcttatgccatgatacaatctggggtgaattggaaacatgggtttgagaattgctctatttaccatagg |
440 |
Q |
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|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
24778137 |
tttcattctctccctagaattgttgaagttgtcttatgccatgatacaatctggggtgaattggaaacatgggtttgagaattgctctatttatcatagg |
24778038 |
T |
|
| Q |
441 |
gtaatgtcatgatttttatcttctcctagtattat |
475 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
24778037 |
gtaatgtcatgatttttatcttctcctagtattat |
24778003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 24778508 - 24778300
Alignment:
| Q |
1 |
tatattaacttataacataacatttgtgtccatttttatctgcagggaaaagaaagtttgattaggattttctcccaaaaagtattccgatgcaagaacc |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
24778508 |
tatattaacttataacataacatttgtgtccatttttatctgcagggcaaagaaagtttgattatgattttctcccaaaaagtattccgatgcaagaacc |
24778409 |
T |
|
| Q |
101 |
cagattttttaccgattctattctcggcagggcgtgatggtttcaatcgcagaatgagtggaatctcaattggaatacatgtaaggggattgccattcac |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24778408 |
cagattttttaccgattctattctcggcagggcgtgatggtttcaatcgcagaatgagtggaatctcaattggaatacatgtaaggggattgccattcac |
24778309 |
T |
|
| Q |
201 |
aagaagaaa |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
24778308 |
aagaagaaa |
24778300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 31 - 243
Target Start/End: Original strand, 24791109 - 24791319
Alignment:
| Q |
31 |
catttttatctgcagggaaaagaaagtttgattaggattttctcccaaaaagtattccgatgcaagaacccagattttttaccgattctattctcggcag |
130 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24791109 |
catttttatctgcagggcaaagaaagtttgattaggattttctcccaaaaagtattccgatgcaagaacccagattttttaccgattctattctcggcag |
24791208 |
T |
|
| Q |
131 |
ggcgtgatggtttcaatcgcagaatgagtggaatctcaattggaatacatgtaaggggattgccattcacaagaagaaaaacatatgaactcacatttct |
230 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24791209 |
ggcgtgatggtttcaatcgcagaatgagtggaatctctattggaatacatgtaaggggattgccattcacaagaag--aaacatatgaactcacatttct |
24791306 |
T |
|
| Q |
231 |
ttctaaaaccaat |
243 |
Q |
| |
|
||||||||||||| |
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|
| T |
24791307 |
ttctaaaaccaat |
24791319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 325 - 431
Target Start/End: Original strand, 24791529 - 24791627
Alignment:
| Q |
325 |
ctgaagctacctgtgttttcattatctccctagaattgttgaagttgtcttatgccatgatacaatctggggtgaattggaaacatgggtttgagaattg |
424 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
24791529 |
ctgaagctaccggtgttttcattctctccctagaattgttgaggttg--------catgatacaatctggggtgaattggaaacatgggtttaagaattg |
24791620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 289
Target Start/End: Original strand, 24791363 - 24791411
Alignment:
| Q |
241 |
aattaggatgaactagaatgaaacactttagtccttggtattctctagc |
289 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
24791363 |
aattaggatgaactagaatgaaacactttctccctcggtattctctagc |
24791411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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