View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7503_low_1 (Length: 914)
Name: NF7503_low_1
Description: NF7503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7503_low_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 539; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 24 - 582
Target Start/End: Original strand, 30877444 - 30878002
Alignment:
| Q |
24 |
agtacttaccttataagtgcttaatttaggttttatccaaacatggagttaaattacttttctcaatgattaaagaaaggaagatgtaaaagcattatgt |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
30877444 |
agtacttaccttataagtgcttaatttaggttttatccaaacatggagttaaattacttttctgaatgattaaagaaaggatgatgtaaaagcattatgt |
30877543 |
T |
|
| Q |
124 |
tgaactaaccttcaaagcacctggaatgacacaacgaagagtatcaagatgtgcattaatcctagctcttctcctcctttcggcctcactatgattcttc |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
30877544 |
tgaactaaccttcaaagcacctggaatgacacaacgaagagtatcaagatgtgcattaatcctagctcttctcctcctttctgcctcactatgattcttc |
30877643 |
T |
|
| Q |
224 |
aaagcttcaacacttctctctgtagtggacacaccctttccttccattttaacaggtgcctctacaagctcccctctctccctatccaaaaccagagaga |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
30877644 |
aaagcttcaacacttctctctgtagtggacacaccctttccttccattttaacaggttcctctacaagctcccctctctccctatccaaaaccagagaga |
30877743 |
T |
|
| Q |
324 |
aacttgaaccatacccacttccaattacctcattgtttacttcaaaaccatttttactaattctctcagtagcatctccaaatatatcataaccttccat |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30877744 |
aacttgaaccatacccacttccaattacctcattgtttacttcaaaaccatttttaccaattctctcagtagcatctccaaatatatcataaccttccat |
30877843 |
T |
|
| Q |
424 |
ttccatagcaaagtgaaaagagaaatgaaaaaggagagttgtttgtggggaccaaacacaggagacaaccttggaaacaatggaataaggagaggtgttt |
523 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30877844 |
ttccatagcaaagtgaaaagagaaatgaaaaaggagagttgtttgtggggaccaaacacaggagacaaccttggaaacaatggaataaggagaggtgttt |
30877943 |
T |
|
| Q |
524 |
gttctgtgtcagagttgttttggagtgtgatagtgatgaaaatgacagtgtcagtgaac |
582 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30877944 |
gttctgtgtcagagttgttttggagtgtgatagtgatgaaaatgacagtgtcagtgaac |
30878002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 2e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 587 - 706
Target Start/End: Complemental strand, 1434926 - 1434807
Alignment:
| Q |
587 |
agaacctgtgtttatgtatgggaagtctcccatcccaaccatgttgtctctagaaaccggagaccttacttaagggattcgagttcagttttgctccgac |
686 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1434926 |
agaacctgtgtttatgtcggggaagtctcccatcccaaccatgttgtctctagaaaccggagaccttacttaagggattcgagttcagttttgctcagac |
1434827 |
T |
|
| Q |
687 |
caatatgaagttggataccc |
706 |
Q |
| |
|
|||| ||||||||||||||| |
|
|
| T |
1434826 |
caatgtgaagttggataccc |
1434807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 773 - 890
Target Start/End: Complemental strand, 1434740 - 1434622
Alignment:
| Q |
773 |
ctatgtagcaccgacacttgagg-ttgaaggcgtctatgagtgtccggggctgtttaacacgtccgttgttggacactgacatttatgattatatttatg |
871 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1434740 |
ctatgtagcaccgacacttgagggttgaaggcgtctctgagtgtcaggtgctgtttaacacgtccgttgttggacactgacatttatgattatatttatg |
1434641 |
T |
|
| Q |
872 |
cgtgtcaatgtcgtgttga |
890 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
1434640 |
cgtgtcaatgtcgtgttga |
1434622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 5e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 123 - 351
Target Start/End: Original strand, 39332708 - 39332933
Alignment:
| Q |
123 |
ttgaactaaccttcaaagcacctggaatgacacaacgaagagtatcaagatgtgcattaatcctagctcttctcctcctttcggcctcactatgattctt |
222 |
Q |
| |
|
||||||||||||| ||| |||||||| |||| |||||| ||||||||||||| |||||| || ||||||||||| ||||| || |||||||||||||| |
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|
| T |
39332708 |
ttgaactaaccttattagcccctggaataacactacgaagtgtatcaagatgtgaattaattcttgctcttctccttctttctgcttcactatgattctt |
39332807 |
T |
|
| Q |
223 |
caaagcttcaacacttctctctgtagtggacacaccctttccttccattttaacaggtgcctctacaagctcccctctctccctatccaaaaccagagag |
322 |
Q |
| |
|
||||||||||| ||||||||| || || |||||||||| ||||| ||| |||| |||||| |||||||| ||| | || ||||| |||||||| || |
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|
| T |
39332808 |
caaagcttcaatacttctctc---aggtgatacaccctttctttccaatttcacagctgcctccacaagctctcctttttctctatctaaaaccagtgaa |
39332904 |
T |
|
| Q |
323 |
aaacttgaaccatacccacttccaattac |
351 |
Q |
| |
|
|| ||||||||| ||| ||||| |||| |
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|
| T |
39332905 |
gaagatgaaccatatccatttccatttac |
39332933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 214 - 351
Target Start/End: Original strand, 30203571 - 30203705
Alignment:
| Q |
214 |
atgattcttcaaagcttcaacacttctctctgtagtggacacaccctttccttccattttaacaggtgcctctacaagctcccctctctccctatccaaa |
313 |
Q |
| |
|
|||||||||||||||||||| ||||||||| || ||||||||||||| ||| | ||| |||| |||||| |||| ||| ||| | || ||||||||| |
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|
| T |
30203571 |
atgattcttcaaagcttcaatacttctctc---aggtgacacaccctttctttctaatttcacagttgcctccacaaactctcctttttctctatccaaa |
30203667 |
T |
|
| Q |
314 |
accagagagaaacttgaaccatacccacttccaattac |
351 |
Q |
| |
|
||||| || || ||||||||| ||| ||||| |||| |
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|
| T |
30203668 |
accagcgaagaagatgaaccatatccatttccatttac |
30203705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 6e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 151 - 351
Target Start/End: Original strand, 12102483 - 12102677
Alignment:
| Q |
151 |
gacacaacgaagagtatcaagatgtgcattaatcctagctcttctcctcctttcggcctcactatgattcttcaaagcttcaacacttctctctgtagtg |
250 |
Q |
| |
|
||||| |||||| |||||||||||| |||||| || |||||||||||| || || ||||||||||||||||||||||| | ||||||| | || |
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|
| T |
12102483 |
gacactacgaagtgtatcaagatgtaaattaattcttgctcttctcctc---tctgcttcactatgattcttcaaagcttcgatacttctccc---aggt |
12102576 |
T |
|
| Q |
251 |
gacacaccctttccttccattttaacaggtgcctctacaagctcccctctctccctatccaaaaccagagagaaacttgaaccatacccacttccaatta |
350 |
Q |
| |
|
||||||||||||| ||| | ||| |||| |||||| |||||||| ||| | || |||||||||||||| || || ||||||||| ||||||||| ||| |
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|
| T |
12102577 |
gacacaccctttctttctaatttcacagctgcctccacaagctctcctttttctctatccaaaaccagtgaagaagatgaaccatatccacttccattta |
12102676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 343
Target Start/End: Original strand, 17146474 - 17146603
Alignment:
| Q |
209 |
tcactatgattcttcaaagcttcaacacttctctctgtagtggacacaccctttccttccattttaacaggtgcctctacaagctcccctctctccctat |
308 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| | ||| |||||||||| ||| | ||| |||| |||||| ||||||| ||| | || |||| |
|
|
| T |
17146474 |
tcactatgattcttcaaagcttcaatacttctctcag--gtg---acaccctttctttctaatttcacagctgcctccgcaagctctcctttttctctat |
17146568 |
T |
|
| Q |
309 |
ccaaaaccagagagaaacttgaaccatacccactt |
343 |
Q |
| |
|
|||||||||| || || ||||||||| |||||| |
|
|
| T |
17146569 |
ccaaaaccagtgaagaagatgaaccatatccactt |
17146603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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