View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7503_low_10 (Length: 374)
Name: NF7503_low_10
Description: NF7503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7503_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 16 - 359
Target Start/End: Original strand, 51212603 - 51212946
Alignment:
| Q |
16 |
ggtactaccgtggctttagtcgggcaaagtgggagtggaaaatcaacagtgataaatttgatagagagattttatgatccacaggatggtcaaattatca |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51212603 |
ggtactaccgtggctttagtcgggcaaagtgggagtggaaaatcaacagtgataaatttgatagagagattttatgatccacaggatggtcaaattatca |
51212702 |
T |
|
| Q |
116 |
ttgacggtattgacctcagagaatttcaattgaaatggatcagacagaaaataggcctagtgagtcaggaaccagttctctttacttgtagcattaaaga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51212703 |
ttgacggtattgacctcagagaatttcaattgaaatggatcagacagaaaataggcctagtgagtcaggaaccagttctctttacttgtagcattaaaga |
51212802 |
T |
|
| Q |
216 |
gaacattgcctatggtaaggatgcggcaaccgatgaagaaatccgagctgcagcagaacttgctaatgctgctaacttcatcgagaaatttcctcttgta |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
51212803 |
gaacattgcctatggtaaggatgcggcaaccgatgaagaaatccgagctgcagcagaacttgctaatgctgctaacttcatcgataaatttcctcttgta |
51212902 |
T |
|
| Q |
316 |
agctctcatttcttgatttatccatcttgtgaaaatttctacac |
359 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51212903 |
agctctcatttcttgatttatccatcttgtgaaaatttctacac |
51212946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 19 - 287
Target Start/End: Original strand, 51199460 - 51199728
Alignment:
| Q |
19 |
actaccgtggctttagtcgggcaaagtgggagtggaaaatcaacagtgataaatttgatagagagattttatgatccacaggatggtcaaattatcattg |
118 |
Q |
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||||| || ||||| || ||||||||||||||||||||||| ||||| | | ||||||||||||||||||||||||||||| |||| || || |||||| |
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| T |
51199460 |
actactgtagctttggtagggcaaagtgggagtggaaaatccacagttgtcagtttgatagagagattttatgatccacaggctggtgaagttctcattg |
51199559 |
T |
|
| Q |
119 |
acggtattgacctcagagaatttcaattgaaatggatcagacagaaaataggcctagtgagtcaggaaccagttctctttacttgtagcattaaagagaa |
218 |
Q |
| |
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||||| | |||||| |||||||||| ||||||||||||||||||||||||||||||| || |||||||| |||||||||||||| |||||||||||||| |
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| T |
51199560 |
acggtgtcaacctcaaagaatttcaactgaaatggatcagacagaaaataggcctagtcagccaggaacctgttctctttacttgcagcattaaagagaa |
51199659 |
T |
|
| Q |
219 |
cattgcctatggtaaggatgcggcaaccgatgaagaaatccgagctgcagcagaacttgctaatgctgc |
287 |
Q |
| |
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|||||| ||||| ||||||| || || |||||||||||| |||||||||| || |||||||||||||| |
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| T |
51199660 |
cattgcatatggcaaggatggtgctactgatgaagaaatcagagctgcagccgagcttgctaatgctgc |
51199728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 28 - 290
Target Start/End: Original strand, 51145480 - 51145742
Alignment:
| Q |
28 |
gctttagtcgggcaaagtgggagtggaaaatcaacagtgataaatttgatagagagattttatgatccacaggatggtcaaattatcattgacggtattg |
127 |
Q |
| |
|
||||| || ||||||||||| ||||| ||||| ||||| | | ||||||||||||||| ||||||||| |||||| || || ||||||||||||| |
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| T |
51145480 |
gctttggtagggcaaagtggaagtgggaaatccacagttgttagtttgatagagagattctatgatccaacagatggtgaagttctcattgacggtatca |
51145579 |
T |
|
| Q |
128 |
acctcagagaatttcaattgaaatggatcagacagaaaataggcctagtgagtcaggaaccagttctctttacttgtagcattaaagagaacattgccta |
227 |
Q |
| |
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|||||| |||||||||| | ||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||| ||||| ||||| || |
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| T |
51145580 |
acctcaaagaatttcaactaaaatggatcagacagaaaataggcctagtcagccaggaacccgttctctttacttgtagcattaaggagaatattgcata |
51145679 |
T |
|
| Q |
228 |
tggtaaggatgcggcaaccgatgaagaaatccgagctgcagcagaacttgctaatgctgctaa |
290 |
Q |
| |
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||| ||||| ||||| |||||||||||| ||| ||||||||||||||||||||||||||| |
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|
| T |
51145680 |
tggcaaggactgtgcaactgatgaagaaatcagagttgcagcagaacttgctaatgctgctaa |
51145742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 28 - 287
Target Start/End: Original strand, 51156621 - 51156880
Alignment:
| Q |
28 |
gctttagtcgggcaaagtgggagtggaaaatcaacagtgataaatttgatagagagattttatgatccacaggatggtcaaattatcattgacggtattg |
127 |
Q |
| |
|
||||| || ||||||||||| ||||| ||||| ||||| | | ||||||||||||||| ||||||||| |||||| || || ||||||||||||| |
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|
| T |
51156621 |
gctttggtagggcaaagtggaagtgggaaatccacagttgttagtttgatagagagattctatgatccaacagatggtgaagttctcattgacggtatca |
51156720 |
T |
|
| Q |
128 |
acctcagagaatttcaattgaaatggatcagacagaaaataggcctagtgagtcaggaaccagttctctttacttgtagcattaaagagaacattgccta |
227 |
Q |
| |
|
|||||| |||||||||| | ||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||| ||||| ||||| || |
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| T |
51156721 |
acctcaaagaatttcaactaaaatggatcagacagaaaataggcctagtcagccaggaacccgttctctttacttgtagcattaaggagaatattgcata |
51156820 |
T |
|
| Q |
228 |
tggtaaggatgcggcaaccgatgaagaaatccgagctgcagcagaacttgctaatgctgc |
287 |
Q |
| |
|
||| ||||| ||||| |||||||||||| ||| |||||||||||||| ||| ||||| |
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|
| T |
51156821 |
tggcaaggactgtgcaactgatgaagaaatcagagttgcagcagaacttggtaacgctgc |
51156880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 28 - 287
Target Start/End: Complemental strand, 29937448 - 29937189
Alignment:
| Q |
28 |
gctttagtcgggcaaagtgggagtggaaaatcaacagtgataaatttgatagagagattttatgatccacaggatggtcaaattatcattgacggtattg |
127 |
Q |
| |
|
||||| || ||||||||||||||||| ||||| ||||| || | ||| ||||||||||| ||||||||| ||||| || || ||||||||||||| |
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| T |
29937448 |
gctttggtagggcaaagtgggagtgggaaatctacagtcatcagtttaatagagagattctatgatccaacaaatggtgaagttctcattgacggtatca |
29937349 |
T |
|
| Q |
128 |
acctcagagaatttcaattgaaatggatcagacagaaaataggcctagtgagtcaggaaccagttctctttacttgtagcattaaagagaacattgccta |
227 |
Q |
| |
|
||||| ||||||| | ||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||| |||| ||| |||| |
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| T |
29937348 |
gcctcaaagaatttaatctgaaatggatcagacagaaaataggcctagtcagccaggaacccgttctctttacttgtagcattaagaagaatatttccta |
29937249 |
T |
|
| Q |
228 |
tggtaaggatgcggcaaccgatgaagaaatccgagctgcagcagaacttgctaatgctgc |
287 |
Q |
| |
|
||| ||||||| |||||| | ||| ||||| |||||||||| ||||||||||||||||| |
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|
| T |
29937248 |
tggcaaggatggggcaactgttgaggaaataagagctgcagcggaacttgctaatgctgc |
29937189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 19 - 296
Target Start/End: Complemental strand, 49737408 - 49737131
Alignment:
| Q |
19 |
actaccgtggctttagtcgggcaaagtgggagtggaaaatcaacagtgataaatttgatagagagattttatgatccacaggatggtcaaattatcattg |
118 |
Q |
| |
|
||||||| |||||| || || |||||||||||||| ||||| || || || | ||||||||||||||||||||||||||||| |||| ||||| |||||| |
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|
| T |
49737408 |
actaccgcggctttggtaggacaaagtgggagtgggaaatcgacggttattagtttgatagagagattttatgatccacagggtggtgaaattctcattg |
49737309 |
T |
|
| Q |
119 |
acggtattgacctcagagaatttcaattgaaatggatcagacagaaaataggcctagtgagtcaggaaccagttctctttacttgtagcattaaagagaa |
218 |
Q |
| |
|
|| ||| |||||| |||||||||| |||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49737308 |
acaatatcaacctcaaagaatttcaactgaaatggatcagacaaaaaataggcttagtcagtcaggaaccagttctctttacttgtagcattaaagagaa |
49737209 |
T |
|
| Q |
219 |
cattgcctatggtaaggatgcggcaaccgatgaagaaatccgagctgcagcagaacttgctaatgctgctaacttcat |
296 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||| |||||||| ||||||| ||||| ||||||| |||||| |
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|
| T |
49737208 |
cattgcctatggtaaggatggagcaacagatgaagaaatcagagctgcaacagaactagctaaagctgctatcttcat |
49737131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 28 - 238
Target Start/End: Original strand, 36285827 - 36286037
Alignment:
| Q |
28 |
gctttagtcgggcaaagtgggagtggaaaatcaacagtgataaatttgatagagagattttatgatccacaggatggtcaaattatcattgacggtattg |
127 |
Q |
| |
|
||||| || ||||||||||||||||| ||||||||||| || || |||||||||| ||||||||||||| | ||| ||| || |||||||||| || |
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|
| T |
36285827 |
gctttggtggggcaaagtgggagtgggaaatcaacagttattaacctgatagagaggctttatgatccacaagctggacaagttctcattgacggaatca |
36285926 |
T |
|
| Q |
128 |
acctcagagaatttcaattgaaatggatcagacagaaaataggcctagtgagtcaggaaccagttctctttacttgtagcattaaagagaacattgccta |
227 |
Q |
| |
|
|| | | ||||||||| | |||||||| ||||||||||||||| | || |||||||| |||||||| ||||| | ||||||||||| || ||| |||| |
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|
| T |
36285927 |
acgtaaaagaatttcagcttaaatggattagacagaaaataggcttggtcagtcaggagccagttctgtttaccggcagcattaaagaaaatattaccta |
36286026 |
T |
|
| Q |
228 |
tggtaaggatg |
238 |
Q |
| |
|
||||||||||| |
|
|
| T |
36286027 |
tggtaaggatg |
36286037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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