View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7503_low_11 (Length: 338)

Name: NF7503_low_11
Description: NF7503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7503_low_11
NF7503_low_11
[»] chr6 (1 HSPs)
chr6 (30-338)||(32509220-32509527)
[»] chr3 (3 HSPs)
chr3 (224-309)||(50233242-50233327)
chr3 (113-197)||(7602068-7602157)
chr3 (164-197)||(34904498-34904531)
[»] chr4 (6 HSPs)
chr4 (163-239)||(47030913-47030990)
chr4 (117-236)||(45989118-45989243)
chr4 (164-197)||(54533665-54533698)
chr4 (121-239)||(42068452-42068576)
chr4 (165-239)||(4919546-4919621)
chr4 (164-197)||(54532317-54532350)
[»] chr8 (3 HSPs)
chr8 (164-197)||(18078841-18078874)
chr8 (164-197)||(18077478-18077511)
chr8 (164-197)||(44521132-44521165)
[»] chr7 (3 HSPs)
chr7 (163-239)||(34094655-34094732)
chr7 (164-239)||(19437189-19437265)
chr7 (117-239)||(6443113-6443242)
[»] chr2 (3 HSPs)
chr2 (164-197)||(19210001-19210034)
chr2 (165-239)||(14096805-14096880)
chr2 (164-197)||(19211361-19211394)
[»] chr1 (6 HSPs)
chr1 (164-197)||(18789020-18789053)
chr1 (164-197)||(52731281-52731314)
chr1 (165-239)||(27286714-27286789)
chr1 (122-235)||(14291769-14291887)
chr1 (164-197)||(18790383-18790416)
chr1 (164-197)||(52732642-52732675)
[»] chr5 (2 HSPs)
chr5 (164-197)||(33683641-33683674)
chr5 (164-197)||(33684968-33685001)


Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 30 - 338
Target Start/End: Original strand, 32509220 - 32509527
Alignment:
Q  30 aatactccatcttccatcttgtcataacgatttggtttaaaatccacccgacccggaacaaaaaaccactaaattaagaattcttaacaccaaaaattca 129  Q
    ||||||||||||||| ||||||||||||||||||||| | |||||||||| |||| ||  ||||||||| | ||||||||||||||||||||||||||||    
T  32509220 aatactccatcttcc-tcttgtcataacgatttggttgagaatccacccgccccgaaatgaaaaaccaccacattaagaattcttaacaccaaaaattca 32509318  T
Q  130 atttgaacaaagaatcataaaccaaataacatattgatttcaagcaattttttgcatctttaaacacttaaagtgaaataaaaaatttcaatttaacaaa 229  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||    
T  32509319 atttgaaaaaagaatcataaaccaaataacatattgatttcaagcaattttctgcatctttaaacatttaaagtgaaataaaaaaattcaatttaacaaa 32509418  T
Q  230 aaatacccaactttagttgtgaaaacaaataacccttttgatttgtaaatggttatggaaacaaaaaattgactgttgtggttgttgttgctgttcaata 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32509419 aaatacccaactttagttgtgaaaacaaataacccttttgatttgtaaatggttatggaaacaaaaaattgactgttgtggttgttgttgctgttcaata 32509518  T
Q  330 agtaccgga 338  Q
    |||||||||    
T  32509519 agtaccgga 32509527  T

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Target: chr3 (Bit Score: 62; Significance: 9e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 224 - 309
Target Start/End: Complemental strand, 50233327 - 50233242
Alignment:
Q  224 aacaaaaaatacccaactttagttgtgaaaacaaataacccttttgatttgtaaatggttatggaaacaaaaaattgactgttgtg 309  Q
    ||||||||||||||||| | | || ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  50233327 aacaaaaaatacccaacctcaattatgaaaacaaataacccttttgatttataaatggttatggaaacgaaaaattgactgttgtg 50233242  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 197
Target Start/End: Original strand, 7602068 - 7602157
Alignment:
Q  113 ttaacaccaaaaattcaatttgaacaaagaatcataaaccaaataacatat-----tgatttcaagcaattttttgcatctttaaacact 197  Q
    ||||||||||||| ||||||| |||  ||| ||| |||||||||| ||| |     ||||||||||||||||| ||||||||||||||||    
T  7602068 ttaacaccaaaaactcaattttaacctagactcacaaaccaaataccatttctttgtgatttcaagcaattttctgcatctttaaacact 7602157  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 34904498 - 34904531
Alignment:
Q  164 tgatttcaagcaattttttgcatctttaaacact 197  Q
    ||||||||||||||||| ||||||||||||||||    
T  34904498 tgatttcaagcaattttctgcatctttaaacact 34904531  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 239
Target Start/End: Original strand, 47030913 - 47030990
Alignment:
Q  163 ttgatttcaagcaattttttgcatctttaaacacttaaagtgaaataaaaaatttcaattt-aacaaaaaatacccaa 239  Q
    |||||| ||| ||||||| |||| |||||||||||||||||||| |||| |||||  |||| ||||||||||||||||    
T  47030913 ttgattacaaacaattttctgcaactttaaacacttaaagtgaattaaataatttttatttgaacaaaaaatacccaa 47030990  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 236
Target Start/End: Original strand, 45989118 - 45989243
Alignment:
Q  117 caccaaaaattcaatttgaacaaagaatcataaaccaaataacatat-----tgatttcaagcaattttttgcatctttaaacacttaaagtgaaataaa 211  Q
    ||||||||| |||||| ||||| | |||||| ||| ||| |||||||     ||||| ||| ||||||| |||| ||||||||||| |||||||| ||||    
T  45989118 caccaaaaactcaattcgaacacataatcatgaacaaaacaacatatccttttgattacaaacaattttctgcaactttaaacactcaaagtgaattaaa 45989217  T
Q  212 aaatttcaattt-aacaaaaaatacc 236  Q
     |||||  |||| |||||||||||||    
T  45989218 taatttttatttgaacaaaaaatacc 45989243  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 54533665 - 54533698
Alignment:
Q  164 tgatttcaagcaattttttgcatctttaaacact 197  Q
    ||||||||||||||||||||||||||||||||||    
T  54533665 tgatttcaagcaattttttgcatctttaaacact 54533698  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 239
Target Start/End: Original strand, 42068452 - 42068576
Alignment:
Q  121 aaaaattcaatttgaacaaagaatcataaaccaaataacata-----ttgatttcaagcaattttttgcatctttaaacacttaaagtgaaataaaaaat 215  Q
    |||||||||||| ||||| | |||||| ||| ||| ||||||     |||||| ||| ||||||| |||| ||||||||| | |||||||| |||| |||    
T  42068452 aaaaattcaattcgaacacataatcatgaacaaaacaacatatccttttgattacaaacaattttctgcaactttaaacattcaaagtgaattaaataat 42068551  T
Q  216 ttcaattt-aacaaaaaatacccaa 239  Q
    ||  |||| ||||||||||||||||    
T  42068552 ttttatttgaacaaaaaatacccaa 42068576  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 239
Target Start/End: Complemental strand, 4919621 - 4919546
Alignment:
Q  165 gatttcaagcaattttttgcatctttaaacacttaaagtgaaataaa-aaatttcaatttaacaaaaaatacccaa 239  Q
    ||||||||||||| ||||| | |||||| |||| ||| ||||||||| |||||| | || ||||||||||||||||    
T  4919621 gatttcaagcaatgttttgtaactttaagcactcaaattgaaataaataaatttaatttcaacaaaaaatacccaa 4919546  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 54532350 - 54532317
Alignment:
Q  164 tgatttcaagcaattttttgcatctttaaacact 197  Q
    ||||||||||||||||| ||||||||||||||||    
T  54532350 tgatttcaagcaattttctgcatctttaaacact 54532317  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 18078841 - 18078874
Alignment:
Q  164 tgatttcaagcaattttttgcatctttaaacact 197  Q
    ||||||||||||||||||||||||||||||||||    
T  18078841 tgatttcaagcaattttttgcatctttaaacact 18078874  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 18077511 - 18077478
Alignment:
Q  164 tgatttcaagcaattttttgcatctttaaacact 197  Q
    ||||||||||||||||| ||||||||||||||||    
T  18077511 tgatttcaagcaattttctgcatctttaaacact 18077478  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 44521165 - 44521132
Alignment:
Q  164 tgatttcaagcaattttttgcatctttaaacact 197  Q
    ||||||||||||||||| ||||||||||||||||    
T  44521165 tgatttcaagcaattttctgcatctttaaacact 44521132  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 34094732 - 34094655
Alignment:
Q  163 ttgatttcaagcaattttttgcatctttaaacacttaaagtgaaataaaaaatttcaattt-aacaaaaaatacccaa 239  Q
    |||||| ||| ||||||| |||| ||||||||||| |||||||| |||| |||||  |||| ||||||||||||||||    
T  34094732 ttgattacaaacaattttctgcaactttaaacactcaaagtgaattaaataatttttatttgaacaaaaaatacccaa 34094655  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 239
Target Start/End: Complemental strand, 19437265 - 19437189
Alignment:
Q  164 tgatttcaagcaattttttgcatctttaaacacttaaagtgaaataaa-aaatttcaatttaacaaaaaatacccaa 239  Q
    |||||||||||||| ||||| | |||||| |||| ||| ||||||||| |||||| | || ||||||||||||||||    
T  19437265 tgatttcaagcaatgttttgtaactttaagcactcaaattgaaataaataaatttaatttcaacaaaaaatacccaa 19437189  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 239
Target Start/End: Complemental strand, 6443242 - 6443113
Alignment:
Q  117 caccaaaaattcaatttgaacaaagaatcataaaccaaataacatat-----tgatttcaagcaattttttgcatctttaaacacttaaagtgaaataaa 211  Q
    ||||||||| |||||| ||||| | |||||| ||| ||| |||||||     ||||| ||| ||||||| |||| ||||||||||| |||||||| ||||    
T  6443242 caccaaaaactcaattcgaacacataatcatgaacaaaacaacatatccttttgattacaaacaattttctgcaactttaaacactcaaagtgaattaaa 6443143  T
Q  212 aaa--tttcaatttaacaaaaaatacccaa 239  Q
     ||  ||| | || ||||||||||||||||    
T  6443142 taattttttatttgaacaaaaaatacccaa 6443113  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 19210034 - 19210001
Alignment:
Q  164 tgatttcaagcaattttttgcatctttaaacact 197  Q
    ||||||||||||||||||||||||||||||||||    
T  19210034 tgatttcaagcaattttttgcatctttaaacact 19210001  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 239
Target Start/End: Complemental strand, 14096880 - 14096805
Alignment:
Q  165 gatttcaagcaattttttgcatctttaaacacttaaagtgaaataaa-aaatttcaatttaacaaaaaatacccaa 239  Q
    ||||||||||||| ||||| | |||||| |||| ||| ||||||||| |||||| | || ||||||||||||||||    
T  14096880 gatttcaagcaatgttttgtaactttaagcactcaaattgaaataaataaatttaatttcaacaaaaaatacccaa 14096805  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 19211361 - 19211394
Alignment:
Q  164 tgatttcaagcaattttttgcatctttaaacact 197  Q
    ||||||||||||||||| ||||||||||||||||    
T  19211361 tgatttcaagcaattttctgcatctttaaacact 19211394  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 18789053 - 18789020
Alignment:
Q  164 tgatttcaagcaattttttgcatctttaaacact 197  Q
    ||||||||||||||||||||||||||||||||||    
T  18789053 tgatttcaagcaattttttgcatctttaaacact 18789020  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 52731314 - 52731281
Alignment:
Q  164 tgatttcaagcaattttttgcatctttaaacact 197  Q
    ||||||||||||||||||||||||||||||||||    
T  52731314 tgatttcaagcaattttttgcatctttaaacact 52731281  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 239
Target Start/End: Complemental strand, 27286789 - 27286714
Alignment:
Q  165 gatttcaagcaattttttgcatctttaaacacttaaagtgaaataaa-aaatttcaatttaacaaaaaatacccaa 239  Q
    ||||||||||||| ||||| | |||||| |||| ||| ||||||||| |||||| | || ||||||||||||||||    
T  27286789 gatttcaagcaatgttttgtaactttaagcactcaaattgaaataaataaatttaatttcaacaaaaaatacccaa 27286714  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 235
Target Start/End: Original strand, 14291769 - 14291887
Alignment:
Q  122 aaaattcaatttgaacaaagaatcataaaccaaataacatat-----tgatttcaagcaattttttgcatctttaaacacttaaagtgaaataaaaaatt 216  Q
    |||| |||||||||||| ||||||||||||||||| ||||||     ||||||||| | | ||| | |||||||||||||   |||||||| |||||| |    
T  14291769 aaaactcaatttgaacacagaatcataaaccaaattacatatccttgtgatttcaatccaatttcttcatctttaaacacaacaagtgaaaaaaaaaaat 14291868  T
Q  217 tcaatttaacaaaaaatac 235  Q
    | | || ||||||| ||||    
T  14291869 taatttcaacaaaatatac 14291887  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 18790383 - 18790416
Alignment:
Q  164 tgatttcaagcaattttttgcatctttaaacact 197  Q
    ||||||||||||||||| ||||||||||||||||    
T  18790383 tgatttcaagcaattttctgcatctttaaacact 18790416  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 52732642 - 52732675
Alignment:
Q  164 tgatttcaagcaattttttgcatctttaaacact 197  Q
    ||||||||||||||||| ||||||||||||||||    
T  52732642 tgatttcaagcaattttctgcatctttaaacact 52732675  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 33683674 - 33683641
Alignment:
Q  164 tgatttcaagcaattttttgcatctttaaacact 197  Q
    ||||||||||||||||| ||||||||||||||||    
T  33683674 tgatttcaagcaattttctgcatctttaaacact 33683641  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 33684968 - 33685001
Alignment:
Q  164 tgatttcaagcaattttttgcatctttaaacact 197  Q
    ||||||||||||||||| ||||||||||||||||    
T  33684968 tgatttcaagcaattttctgcatctttaaacact 33685001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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