View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7503_low_12 (Length: 253)

Name: NF7503_low_12
Description: NF7503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7503_low_12
NF7503_low_12
[»] chr6 (11 HSPs)
chr6 (3-238)||(11314941-11315176)
chr6 (64-209)||(11160891-11161036)
chr6 (64-209)||(11196477-11196622)
chr6 (64-209)||(11199467-11199612)
chr6 (64-209)||(11241692-11241837)
chr6 (64-209)||(11156024-11156169)
chr6 (110-238)||(11209117-11209245)
chr6 (111-238)||(11170295-11170422)
chr6 (110-209)||(11275708-11275807)
chr6 (64-209)||(11132748-11132893)
chr6 (64-135)||(11199716-11199787)
[»] scaffold1207 (1 HSPs)
scaffold1207 (110-209)||(642-741)


Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 3 - 238
Target Start/End: Original strand, 11314941 - 11315176
Alignment:
Q  3 taaatatgagaccaccattgtgataaaatctttaaatcaaggtgaaaatctcgaatcaaaaattagtcgcgcaaagtttgaagaactcaacgagcatcac 102  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  11314941 taaatatgagaccaccattgtgataaaatctttaaaccgaggtgaaaatctcgaatcaaaaattagtcgcgcaaagtttgaagaactcaacgaacatcac 11315040  T
Q  103 atcaaaaagtgcatggagattgtagaaaagtgtctagaggatagtgggatggtcaagagtgacattcatgatgttgtgcttgttggcggctctactagga 202  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11315041 atcaaaaagtgcatgaagattgtagaaaagtgtctagaggatagtgggatggtcaagagtgacattcatgatgttgtgcttgttggcggctctactagga 11315140  T
Q  203 ttgtaaagctgcatcgacgtttgagtggtttctttg 238  Q
    |||||||||||||||||||||| |||||||||||||    
T  11315141 ttgtaaagctgcatcgacgtttaagtggtttctttg 11315176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 64 - 209
Target Start/End: Complemental strand, 11161036 - 11160891
Alignment:
Q  64 attagtcgcgcaaagtttgaagaactcaacgagcatcacatcaaaaagtgcatggagattgtagaaaagtgtctagaggatagtgggatggtcaagagtg 163  Q
    |||||||||||||||||||| ||||||||| || ||||| || | ||||||||||||||||||||||||||| ||   ||||||||||||| |||||||     
T  11161036 attagtcgcgcaaagtttgaggaactcaacaagaatcacttcgacaagtgcatggagattgtagaaaagtgtataattgatagtgggatggacaagagta 11160937  T
Q  164 acattcatgatgttgtgcttgttggcggctctactaggattgtaaa 209  Q
     ||||||||||||||| |||||||| ||||||||||||||||||||    
T  11160936 gcattcatgatgttgtccttgttggtggctctactaggattgtaaa 11160891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 64 - 209
Target Start/End: Complemental strand, 11196622 - 11196477
Alignment:
Q  64 attagtcgcgcaaagtttgaagaactcaacgagcatcacatcaaaaagtgcatggagattgtagaaaagtgtctagaggatagtgggatggtcaagagtg 163  Q
    |||||||||||||||||||| ||||||||| || ||||| || | ||||||||||||||||| ||||||||| ||   ||||||||||||| |||||||     
T  11196622 attagtcgcgcaaagtttgaggaactcaacaagaatcacttcgacaagtgcatggagattgtggaaaagtgtataattgatagtgggatggacaagagta 11196523  T
Q  164 acattcatgatgttgtgcttgttggcggctctactaggattgtaaa 209  Q
     ||||||||||||||| |||||||||||||||||||||||||||||    
T  11196522 gcattcatgatgttgtccttgttggcggctctactaggattgtaaa 11196477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 64 - 209
Target Start/End: Complemental strand, 11199612 - 11199467
Alignment:
Q  64 attagtcgcgcaaagtttgaagaactcaacgagcatcacatcaaaaagtgcatggagattgtagaaaagtgtctagaggatagtgggatggtcaagagtg 163  Q
    |||||||||||||||||||| ||||||||| || ||||| || | ||||||||||||||||||||||||||| ||   ||||||||||||| |||||||     
T  11199612 attagtcgcgcaaagtttgaggaactcaacaagaatcacttcgacaagtgcatggagattgtagaaaagtgtataattgatagtgggatggacaagagta 11199513  T
Q  164 acattcatgatgttgtgcttgttggcggctctactaggattgtaaa 209  Q
     ||||||||||||||| |||||||| ||||||||||||||||||||    
T  11199512 gcattcatgatgttgtccttgttggtggctctactaggattgtaaa 11199467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 64 - 209
Target Start/End: Original strand, 11241692 - 11241837
Alignment:
Q  64 attagtcgcgcaaagtttgaagaactcaacgagcatcacatcaaaaagtgcatggagattgtagaaaagtgtctagaggatagtgggatggtcaagagtg 163  Q
    |||||||||||||||||||| ||||||||| || ||||| || | ||||||||||||||||| ||||||||| ||   ||||||||||||| |||||||     
T  11241692 attagtcgcgcaaagtttgaggaactcaacaagaatcacttcgacaagtgcatggagattgtggaaaagtgtataattgatagtgggatggacaagagta 11241791  T
Q  164 acattcatgatgttgtgcttgttggcggctctactaggattgtaaa 209  Q
     ||||||||||||||| |||||||| ||||||| ||||||||||||    
T  11241792 gcattcatgatgttgtccttgttggtggctctattaggattgtaaa 11241837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 64 - 209
Target Start/End: Complemental strand, 11156169 - 11156024
Alignment:
Q  64 attagtcgcgcaaagtttgaagaactcaacgagcatcacatcaaaaagtgcatggagattgtagaaaagtgtctagaggatagtgggatggtcaagagtg 163  Q
    |||||||| ||||||||||| ||||||||| || ||||| || | ||||||||||||||||| ||||||||| ||   ||||||||||||| |||||||     
T  11156169 attagtcgtgcaaagtttgaggaactcaacaagaatcacttcgacaagtgcatggagattgtggaaaagtgtataattgatagtgggatggacaagagta 11156070  T
Q  164 acattcatgatgttgtgcttgttggcggctctactaggattgtaaa 209  Q
     ||||||||||||||| |||||||| |||||||| |||||||||||    
T  11156069 gcattcatgatgttgtccttgttggtggctctaccaggattgtaaa 11156024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 110 - 238
Target Start/End: Complemental strand, 11209245 - 11209117
Alignment:
Q  110 agtgcatggagattgtagaaaagtgtctagaggatagtgggatggtcaagagtgacattcatgatgttgtgcttgttggcggctctactaggattgtaaa 209  Q
    |||||||||||||||||||||||||| |||| ||||||||||| || |||||| |||||||||||||||||||||||||||| ||||| |||||||||||    
T  11209245 agtgcatggagattgtagaaaagtgtatagaagatagtgggatagtgaagagtaacattcatgatgttgtgcttgttggcgggtctaccaggattgtaaa 11209146  T
Q  210 gctgcatcgacgtttgagtggtttctttg 238  Q
      |||| | || ||||| || ||||||||    
T  11209145 agtgcaacaacttttgattgatttctttg 11209117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 111 - 238
Target Start/End: Complemental strand, 11170422 - 11170295
Alignment:
Q  111 gtgcatggagattgtagaaaagtgtctagaggatagtgggatggtcaagagtgacattcatgatgttgtgcttgttggcggctctactaggattgtaaag 210  Q
    ||||||||||| ||||||||||||| |||| ||||||||||| || |||||| | |||||||||||||||||||||||||||||||| |||||||||||     
T  11170422 gtgcatggagagtgtagaaaagtgtatagaagatagtgggatagtgaagagtaaaattcatgatgttgtgcttgttggcggctctaccaggattgtaaaa 11170323  T
Q  211 ctgcatcgacgtttgagtggtttctttg 238  Q
     |||| | |||||||| || ||||||||    
T  11170322 gtgcaacaacgtttgattgatttctttg 11170295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 110 - 209
Target Start/End: Complemental strand, 11275807 - 11275708
Alignment:
Q  110 agtgcatggagattgtagaaaagtgtctagaggatagtgggatggtcaagagtgacattcatgatgttgtgcttgttggcggctctactaggattgtaaa 209  Q
    |||||||||| ||||||||||||||| |||  |||||||||||   ||||||| |||||||||||||||||||||||||||| ||||| |||||||||||    
T  11275807 agtgcatggaaattgtagaaaagtgtatagcagatagtgggataaacaagagtaacattcatgatgttgtgcttgttggcgggtctaccaggattgtaaa 11275708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 64 - 209
Target Start/End: Complemental strand, 11132893 - 11132748
Alignment:
Q  64 attagtcgcgcaaagtttgaagaactcaacgagcatcacatcaaaaagtgcatggagattgtagaaaagtgtctagaggatagtgggatggtcaagagtg 163  Q
    |||||||| ||||||||||||||| ||||| |  ||||| |||| ||||| ||||||||||  ||||||||||||   ||||| ||| ||| |||||||     
T  11132893 attagtcgagcaaagtttgaagaagtcaacaataatcacttcaacaagtgtatggagattgcggaaaagtgtctaatagatagcgggttggacaagagta 11132794  T
Q  164 acattcatgatgttgtgcttgttggcggctctactaggattgtaaa 209  Q
      |||||||||||||| ||||||||||| ||||| |||||||||||    
T  11132793 gtattcatgatgttgtccttgttggcgggtctacgaggattgtaaa 11132748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 11199787 - 11199716
Alignment:
Q  64 attagtcgcgcaaagtttgaagaactcaacgagcatcacatcaaaaagtgcatggagattgtagaaaagtgt 135  Q
    |||||||||||||||||||| ||||||||| || || || || | |||||||||||||||||||||||||||    
T  11199787 attagtcgcgcaaagtttgaggaactcaacaagaatgacttcgacaagtgcatggagattgtagaaaagtgt 11199716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1207 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 110 - 209
Target Start/End: Complemental strand, 741 - 642
Alignment:
Q  110 agtgcatggagattgtagaaaagtgtctagaggatagtgggatggtcaagagtgacattcatgatgttgtgcttgttggcggctctactaggattgtaaa 209  Q
    |||||||||||| ||||||||| ||| |||  |||||||||||   ||||||| || ||||||||||||| ||||||||||||||||| |||||||||||    
T  741 agtgcatggagagtgtagaaaactgtatagcagatagtgggataaacaagagtaactttcatgatgttgtccttgttggcggctctacaaggattgtaaa 642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University