View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7503_low_15 (Length: 205)
Name: NF7503_low_15
Description: NF7503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7503_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 47828792 - 47828619
Alignment:
| Q |
19 |
cttgagacatattagcaaagcaaatcctaaaccagccaggttcagaacaatgacaagaagatccaggagatatattcaaaccaatttggtaaagaatcct |
118 |
Q |
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| T |
47828792 |
cttgagacatattagcaaagcaaatcctaaaccacccaggttcagaacaatgacaagaagatccaggagatatattcaaaccaatttggtaaagaatcct |
47828693 |
T |
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| Q |
119 |
tttccaaagctcattctctgcctcaaaagttgcagaactcaataaatgcctcatatcaacccaacagaataatc |
192 |
Q |
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| T |
47828692 |
tttccaaagctcattctctgcctcaaaagttgcagaactcaataaatgcctcatatcaacccaacagaacaatc |
47828619 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 42788822 - 42788893
Alignment:
| Q |
26 |
catattagcaaagcaaatcctaaaccagccaggttcagaacaatgacaagaagatccaggagatatattcaa |
97 |
Q |
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| T |
42788822 |
catattagcaaagcagactctaaaccaaccaggttgatcacaatgacaagaacaccccggagatatattcaa |
42788893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 42798360 - 42798431
Alignment:
| Q |
26 |
catattagcaaagcaaatcctaaaccagccaggttcagaacaatgacaagaagatccaggagatatattcaa |
97 |
Q |
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||||||||||||||| | |||||||| ||||||| | ||||||||||||| | || |||||||||||||| |
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| T |
42798360 |
catattagcaaagcagactctaaaccaaccaggttgatcacaatgacaagaacaccccggagatatattcaa |
42798431 |
T |
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