View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7503_low_2 (Length: 636)
Name: NF7503_low_2
Description: NF7503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7503_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 268 - 621
Target Start/End: Original strand, 27099331 - 27099685
Alignment:
| Q |
268 |
gttaagttattgtgtgcatttagtgtttatgggaactatataatgaatgaatgagggaccatgatgagtgcatgcactcaaattttgacgcgtttacaca |
367 |
Q |
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| T |
27099331 |
gttaagttattgtgtgcatttagtgtttatgggaactatataatgaatgaatgagggaccatgatgagtgcatgcactcaaattttgacgcgtttacaca |
27099430 |
T |
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| Q |
368 |
gtcaacacatctatgccgttgaatcaagattaaaccgtctaaacttttaatttggtattttctatttaaaaagaattaaaaatagcattgaaatttaaac |
467 |
Q |
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| T |
27099431 |
gccaacacatctatgccgttgaatcaagattaaaccgtctaaacttttaatttggtattttctatttaaaaagaattaaaaatagcattgaaatttaaac |
27099530 |
T |
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| Q |
468 |
catttaatcttgatccaacgaccacgaatgtattgtctacatgaatgtttcaaaattttgatggaagg-aaataccattccttgaaggaggtcatattaa |
566 |
Q |
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| T |
27099531 |
catttaatcttaatccaacgaccacgaatgtattgtctacatgaatgcttcaaaattttgatggaaggaaaataccattccttgaaggaggtcatattaa |
27099630 |
T |
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| Q |
567 |
ttttgaaatgacatgaaagggtgtggttggataggatatttacagtgttccccat |
621 |
Q |
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| T |
27099631 |
ttttgaaatgacatgaaagggtgtggttggataggatatttacagtgttccccat |
27099685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 27099081 - 27099288
Alignment:
| Q |
18 |
attttgcggtggaagttccggtgacagccgcaggctgcacattggaggctgtttaccgcggatggcgatgagtcatcgatggtgaattcaccgcagccgt |
117 |
Q |
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| T |
27099081 |
attttgcggtggaagttccggtgacagccgcaggctgcacattggaggctgtttaccgcggatggcgatgagtcgtcgatggtgaattcaccgcagccgt |
27099180 |
T |
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| Q |
118 |
cggtggcgtagcttccaaggcttgctgcatggtttcttaaacactctctgtagatatagttttgtgaatgtgatgatgaagatgataacattcctcctcc |
217 |
Q |
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| T |
27099181 |
cggtggcgtagcttccaaggcttgctgcatggtttcttaaacactctctgtagatatagttttgtgaatgtgatgatgaagatgataacattcctcctcc |
27099280 |
T |
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| Q |
218 |
ttccattg |
225 |
Q |
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| T |
27099281 |
ttccattg |
27099288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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