View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7503_low_3 (Length: 590)
Name: NF7503_low_3
Description: NF7503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7503_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 8 - 374
Target Start/End: Original strand, 13886788 - 13887154
Alignment:
| Q |
8 |
cgaagaatattttagggctaccggaaaatccgagattggaaagataatggtggttgatttaactatgcgaggtcgggctctccaatggtggttatggtgg |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13886788 |
cgaaaaatattttagggctaccggaaaatccgagattggaaagataatggtggttgatttaactatgcgaggtcgggctctccaatggtggttatggtgg |
13886887 |
T |
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| Q |
108 |
ttttcctgtcacccgcgaccaagttgggacacattcacgacggcacttttatggcgcttcaagccggaatggcgacaccttctacctgtatcagacgaag |
207 |
Q |
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| T |
13886888 |
ttttcctgtcacccgcgactaagttgggacacattcacgacggcacttttatggcgcttcaagccggaatggcgacaccttctacctgtatcagacgaag |
13886987 |
T |
|
| Q |
208 |
aaattgagccaacttctgaatcgttgaaatctacagaatcttcttccttccttgaagattcagttactgatcctatctccacaatttttggtgacccgag |
307 |
Q |
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| T |
13886988 |
aaattgagccaacttctgaatcgttgaaatctacagaatcttcttccttccttgaagattcagttactgatcctatctccacaatttttggtgacccgag |
13887087 |
T |
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| Q |
308 |
gaacccgacgttggcgcacatccctacgccggagaagatgcaattggattcttgctcgccagagaag |
374 |
Q |
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| T |
13887088 |
gaacccgacgttggcgcacatccctacgccggagaagatgcaattggattcttgctcgccagagaag |
13887154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 537 - 573
Target Start/End: Original strand, 13887315 - 13887351
Alignment:
| Q |
537 |
atggttgatgcacacatatatcttacaagaaagtata |
573 |
Q |
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| T |
13887315 |
atggttgatgcacacatatatcttacaagaaagtata |
13887351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 13 - 368
Target Start/End: Original strand, 30452948 - 30453300
Alignment:
| Q |
13 |
aatattttagggctaccggaaaatccgagattggaaagataatggtggttgatttaactatgcgaggtcgggctctccaatggtggttatggtggttttc |
112 |
Q |
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| T |
30452948 |
aatattttagggctaccggaaaatccgaggttgcaaagatgatggtggctgatttgactatgcgagggcg---tctcgaatggtggttgtggtggtcgcc |
30453044 |
T |
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| Q |
113 |
ctgtcacccgcgaccaagttgggacacattcacgacggcacttttatggcgcttcaagccggaatggcgacaccttctacctgtatcagacgaagaaatt |
212 |
Q |
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| T |
30453045 |
ccgtcacccgcaatcaaattgggacacattcaccacggcactgttttggcgcttcaagccggaatggcgacacctgctacctatattggacgacgaaatt |
30453144 |
T |
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| Q |
213 |
gagccaacttctgaatcgttgaaatctacagaatcttcttccttccttgaagattcagttactgatcctatctccacaatttttggtgacccgaggaacc |
312 |
Q |
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|||||||||||| || | |||||||| |||||| | ||| ||||||||||||||||||| | ||| ||| | || || ||||||||||||| ||| |
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| T |
30453145 |
gagccaacttctaaaccattgaaatccacagaagcaactttcttccttgaagattcagttgccgatgctagccttacggttgttggtgacccgagaaaca |
30453244 |
T |
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| Q |
313 |
cgacgttggcgcacatccctacgccggagaagatgcaattggattcttgctcgcca |
368 |
Q |
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|||| ||||||||||||| |||||||||||| |||||||||| ||||||||||||| |
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| T |
30453245 |
cgacattggcgcacatccgtacgccggagaatatgcaattggcttcttgctcgcca |
30453300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 6102165 - 6102232
Alignment:
| Q |
160 |
ggcgcttcaagccggaatggcgacaccttctacctgtatcagacgaagaaattgagccaacttctgaa |
227 |
Q |
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| T |
6102165 |
ggcgctttaagctggaatggcgacaccttctacctatattggatgaagaaatggagccaacttctgaa |
6102232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 157 - 230
Target Start/End: Original strand, 24733962 - 24734035
Alignment:
| Q |
157 |
tatggcgcttcaagccggaatggcgacaccttctacctgtatcagacgaagaaattgagccaacttctgaatcg |
230 |
Q |
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| T |
24733962 |
tatggtgctttaagccggaatggcgacaccttctacctatattggatgaagaaatggagccaacttctgaatcg |
24734035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 24733875 - 24733968
Alignment:
| Q |
13 |
aatattttagggctaccggaaaatccgagattggaaagataatggtggttgatttaactatgcgaggtcgggctctccaatggtggttatggtg |
106 |
Q |
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| T |
24733875 |
aatatttcagggcaacacgaaaatcagaggttgcaaagatgatggtggttgatttgactatgagaggtcctgctcttcgatggtggctatggtg |
24733968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 33328466 - 33328545
Alignment:
| Q |
13 |
aatattttagggctaccggaaaatccgagattggaaagataatggtggttgatttaactatgcgaggtcgggctctccaa |
92 |
Q |
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||||||| ||||| || |||||||||||| | ||||| ||||||| |||||| |||||| ||||||||||||||||| |
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| T |
33328466 |
aatatttcagggcgacgggaaaatccgaggtgccaaagaagatggtggctgatttcactatgtgaggtcgggctctccaa |
33328545 |
T |
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