View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7503_low_4 (Length: 550)

Name: NF7503_low_4
Description: NF7503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7503_low_4
NF7503_low_4
[»] chr2 (4 HSPs)
chr2 (19-538)||(26374769-26375289)
chr2 (108-178)||(40519198-40519269)
chr2 (45-106)||(23927149-23927211)
chr2 (45-106)||(26614350-26614412)
[»] scaffold0002 (2 HSPs)
scaffold0002 (108-178)||(186174-186245)
scaffold0002 (176-223)||(163122-163169)
[»] chr4 (3 HSPs)
chr4 (108-178)||(491265-491336)
chr4 (45-106)||(18336962-18337024)
chr4 (176-223)||(18344163-18344210)
[»] chr3 (1 HSPs)
chr3 (108-178)||(13222839-13222910)
[»] chr1 (2 HSPs)
chr1 (112-178)||(3856344-3856411)
chr1 (45-106)||(13090182-13090244)
[»] chr5 (1 HSPs)
chr5 (108-178)||(34654593-34654664)
[»] chr8 (1 HSPs)
chr8 (45-106)||(38743897-38743959)
[»] chr6 (1 HSPs)
chr6 (52-106)||(5336170-5336224)


Alignment Details
Target: chr2 (Bit Score: 470; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 19 - 538
Target Start/End: Original strand, 26374769 - 26375289
Alignment:
Q  19 aaacttccatttgtccaaattttgagaccaatcatagactttattgagataggtaaacaaaggaccgccctgagaaccttatatgagatgcagcatacaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26374769 aaacttccatttgtccaaattttgagaccaatcatagactttattgagataggtaaacaaaggaccgccctgagaaccttacatgagatgcagcatacaa 26374868  T
Q  119 ctatccattgtactgtgctctccaagtgtgcttgtttcccttcttccttaccatgacaagattaaaacaaataagaaagttttatgaaaataaaatctta 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  26374869 ctatccattgtactgtgctctccaagtgtgcttgtttcccttcttccttaccatgacaagattaaaacaaataagaaaattttatgaaaataaaatctta 26374968  T
Q  219 ttaatttttatttttgaacaaatnnnnnnnnntcttattaatagaggttccattgataaggtgaatgaatcggatacattatagtttatctgcttgtttt 318  Q
    |||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26374969 ttaatttttatttttgaacaaatcaaaaaaaatcttattaatagaggttccattgataaggtgaatgaatcggatacattatagtttatctgcttgtttt 26375068  T
Q  319 gatgtgtttagacgt-caacagagcaaatatttttaacatatgaaagtttaatcatcattatatgttcatgattacaaaatgtcctttcttcacttgata 417  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26375069 gatgtgcttagacgttcaacagagcaaatatttttaacatatgaaagtttaatcatcattatatgttcatgattacaaaatgtcctttcttcacttgata 26375168  T
Q  418 gttggcaccaatgatttaactttacaacatgaattttgaagcaagataaaaagattgggaatgttggtggtaacaaaaacaaaattcacaattataactt 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26375169 gttggcaccaatgatttaactttacaacatgaattttgaagcaagataaaaagattgggaatgttggtggtaacaaaaacaaaattcacaattataactt 26375268  T
Q  518 gtaaatgtggtttcgtgtgtg 538  Q
    ||||||||||||| |||||||    
T  26375269 gtaaatgtggttttgtgtgtg 26375289  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 108 - 178
Target Start/End: Complemental strand, 40519269 - 40519198
Alignment:
Q  108 gcagcatacaactatccattgtactgtgctctccaagtgtgcttgtttc-ccttcttccttaccatgacaag 178  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||    
T  40519269 gcagcatacaactatccattgtactgcgctctccaagtgtgcttgtttcaccttcttccttcccatgacaag 40519198  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 23927149 - 23927211
Alignment:
Q  45 accaatcatagactttattgagataggtaaa-caaaggaccgccctgagaaccttatatgaga 106  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||| |||||| |||||||||    
T  23927149 accaatcatagactttattgagataggtaaaccaaaggacccccctaagaaccgtatatgaga 23927211  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 26614350 - 26614412
Alignment:
Q  45 accaatcatagactttattgagataggtaaa-caaaggaccgccctgagaaccttatatgaga 106  Q
    ||||||||||||||||||||||||||||||| ||||||| | ||||||||||| |||||||||    
T  26614350 accaatcatagactttattgagataggtaaaccaaaggatccccctgagaaccgtatatgaga 26614412  T

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Target: scaffold0002 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 108 - 178
Target Start/End: Original strand, 186174 - 186245
Alignment:
Q  108 gcagcatacaactatccattgtactgtgctctccaagtgtgcttgttt-cccttcttccttaccatgacaag 178  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||    
T  186174 gcagcatacaactatccattgtactgcgctctccaagtgtgcttgtttccccttcttccttcccatgacaag 186245  T

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Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 223
Target Start/End: Original strand, 163122 - 163169
Alignment:
Q  176 aagattaaaacaaataagaaagttttatgaaaataaaatcttattaat 223  Q
    |||| ||||| ||||||||||  |||||||||||||||||||||||||    
T  163122 aagaataaaataaataagaaaactttatgaaaataaaatcttattaat 163169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 108 - 178
Target Start/End: Complemental strand, 491336 - 491265
Alignment:
Q  108 gcagcatacaactatccattgtactgtgctctccaagtgtgcttgttt-cccttcttccttaccatgacaag 178  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||    
T  491336 gcagcatacaactatccattgtactgcgctctccaagtgtgcttgtttccccttcttccttcccatgacaag 491265  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 18337024 - 18336962
Alignment:
Q  45 accaatcatagactttattgagataggtaaa-caaaggaccgccctgagaaccttatatgaga 106  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||    
T  18337024 accaatcatagactttattgagataggtaaaccaaaggacccccctgagaaccgtatatgaga 18336962  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 176 - 223
Target Start/End: Complemental strand, 18344210 - 18344163
Alignment:
Q  176 aagattaaaacaaataagaaagttttatgaaaataaaatcttattaat 223  Q
    |||| ||||| |||||||||| ||||||||||||||||||||||||||    
T  18344210 aagaataaaataaataagaaaattttatgaaaataaaatcttattaat 18344163  T

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Target: chr3 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 108 - 178
Target Start/End: Original strand, 13222839 - 13222910
Alignment:
Q  108 gcagcatacaactatccattgtactgtgctctccaagtgtgcttgttt-cccttcttccttaccatgacaag 178  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||    
T  13222839 gcagcatacaactatccattgtactgcgctctccaagtgtgcttgtttccccttcttccttcccatgacaag 13222910  T

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Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 3856411 - 3856344
Alignment:
Q  112 catacaactatccattgtactgtgctctccaagtgtgcttgttt-cccttcttccttaccatgacaag 178  Q
    ||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||    
T  3856411 catacaactatccattgtactgctctctccaagtgtgcttgtttccccttcttccttaccatgacaag 3856344  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 13090182 - 13090244
Alignment:
Q  45 accaatcatagactttattgagataggtaaa-caaaggaccgccctgagaaccttatatgaga 106  Q
    |||||||||| |||||||||||||||||||| ||||||||| ||| ||||||| |||||||||    
T  13090182 accaatcatatactttattgagataggtaaaccaaaggacccccccgagaaccgtatatgaga 13090244  T

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Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 108 - 178
Target Start/End: Complemental strand, 34654664 - 34654593
Alignment:
Q  108 gcagcatacaactatccattgtactgtgctctccaagtgtgcttgttt-cccttcttccttaccatgacaag 178  Q
    ||||||||||||||||||||||| || |||||||| |||||||||||| |||||||||||| ||||||||||    
T  34654664 gcagcatacaactatccattgtattgcgctctccatgtgtgcttgtttccccttcttccttcccatgacaag 34654593  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 38743897 - 38743959
Alignment:
Q  45 accaatcatagactttattgagataggtaaa-caaaggaccgccctgagaaccttatatgaga 106  Q
    ||||||||||||||||||||||||||||||| ||||||||| || ||| |||| |||||||||    
T  38743897 accaatcatagactttattgagataggtaaaccaaaggacccccttgacaaccatatatgaga 38743959  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 5336224 - 5336170
Alignment:
Q  52 atagactttattgagataggtaaac-aaaggaccgccctgagaaccttatatgaga 106  Q
    ||||||||||||||||||||||||| |||||||  ||||||||||| |||||||||    
T  5336224 atagactttattgagataggtaaaccaaaggaca-ccctgagaaccgtatatgaga 5336170  T

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