View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7503_low_7 (Length: 476)
Name: NF7503_low_7
Description: NF7503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7503_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 10 - 459
Target Start/End: Original strand, 54894951 - 54895400
Alignment:
| Q |
10 |
aagaatatgaatatatcaaaactataccaaatgcataagcagttgctggattatactcatttctaacaatcttatcaccatcagcataccacgcgatttc |
109 |
Q |
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| T |
54894951 |
aagaaaatgaatatatcaaaactataccaaatgcataagcagttgctggattatactcatttctaacaatcttatcaccatcagcataccacgcgatttc |
54895050 |
T |
|
| Q |
110 |
atcccctttattatattccctttcactgcaacaaaatcattcagtaacacacaatggatctgaaatcgaaacacagatctaaacccttacctcaatggac |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54895051 |
atcccctttattatattccctttcactgcaacaaaatcattcagtaacacacaatggatctgaaatcgaaacacagatctaaacccttacctcaatggac |
54895150 |
T |
|
| Q |
210 |
gaaaccgaatcgtaacagaaatgctatctgctgacgtggacgtctcaacaggatccacactcagctcctcgccaccaaacgcgaccggagaacgatctct |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
54895151 |
gaaaccgaatcgtaacagaaatgctatctgctgacgtggacgtctcaacaggatccacactcagctcctcgccaccaaacgcaaccggagaacgatctct |
54895250 |
T |
|
| Q |
310 |
ataaccaccgagcgaacctccgtaacacgttgactcactccgaccgcgattcggagtggtggatcgagcgttgaaaaacgacgacgtagtggaagatgaa |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54895251 |
ataaccaccgagcgaacctccgtaacacgttgactcactccgaccgcgattcggagtggtggatcgagcgttgaaaaacgacgacgtagtggaagatgaa |
54895350 |
T |
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| Q |
410 |
gaacgaggtattattcttccgttagtgagagaagaagaggatgaagttga |
459 |
Q |
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| T |
54895351 |
gaacgaggtattattcttccgttagtgagagaagaagaggatgaagttga |
54895400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 34 - 141
Target Start/End: Original strand, 26859309 - 26859416
Alignment:
| Q |
34 |
taccaaatgcataagcagttgctggattatactcatttctaacaatcttatcaccatcagcataccacgcgatttcatcccctttattatattccctttc |
133 |
Q |
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||||||| ||||||||||| ||||||||| ||||||| || ||||||||||||||||||||||||||||| ||||| || ||| ||| ||| || ||||| |
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| T |
26859309 |
taccaaaagcataagcagtagctggattaaactcattcctcacaatcttatcaccatcagcataccacgcaatttcgtctcctctatgatactctctttc |
26859408 |
T |
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| Q |
134 |
actgcaac |
141 |
Q |
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|||||||| |
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| T |
26859409 |
actgcaac |
26859416 |
T |
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