View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7503_low_8 (Length: 430)
Name: NF7503_low_8
Description: NF7503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7503_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 107 - 419
Target Start/End: Original strand, 47574854 - 47575167
Alignment:
| Q |
107 |
caaacttggtagtccataacaaa-caaaatcataatatttactgttaaaagtatgtaacaatacatgtcattaatcaatcgtccaaaaaatgcatataag |
205 |
Q |
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| T |
47574854 |
caaacatggtagtcgatagcaaaacaaaatcataatatttactgttaaaagtatgtaacaatacatgtcatta-tcaatcgtccaaaaaatgcatataag |
47574952 |
T |
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| Q |
206 |
taatgaataaacaaaaataatcaaggtaattagatggatttgtttgagagaaccttgtggtggaggaggtggaccagaaacgttaacgttaatagcagga |
305 |
Q |
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| T |
47574953 |
taatgaataaacaaaaataatcaaggtaattagatggatttgtttgagagaaccttgtggtggaggaggtggaccagaaacgttaacgttaatagcagga |
47575052 |
T |
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| Q |
306 |
ggagtgttttgattgtagtaagccatctcacttcactctttgga-nnnnnnnnnccactcttttctcagaacaatttatgattgaaagcgatgtgagaac |
404 |
Q |
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| T |
47575053 |
ggagtgttttgattgtagtaagccatctcacttcactctttggattttttttttccactcttttctcagaacaatttatgattgaaagcgatgtgagaac |
47575152 |
T |
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| Q |
405 |
aattgtagtgtctct |
419 |
Q |
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| T |
47575153 |
aattgtagtgtctct |
47575167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 224 - 334
Target Start/End: Original strand, 47569943 - 47570045
Alignment:
| Q |
224 |
aatcaaggtaattagatggatttgtttgagagaaccttgtggtggaggaggtggaccagaaacgttaacgttaatagcaggaggagtgttttgattgtag |
323 |
Q |
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| T |
47569943 |
aatcatggtaattagatggatttgtttgagc--accttgtgc---aggtggtggaccagaaacgttaacgttaaccgcaggagga---ttttgattgtag |
47570034 |
T |
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| Q |
324 |
taagccatctc |
334 |
Q |
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| T |
47570035 |
taagccatctc |
47570045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 47574795 - 47574826
Alignment:
| Q |
18 |
agttcaagtagttatcgttcaaatttagtcat |
49 |
Q |
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| T |
47574795 |
agttcaagtagttatcgttcaaatttagtcat |
47574826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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