View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7504_high_1 (Length: 874)
Name: NF7504_high_1
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7504_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 517; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 292 - 867
Target Start/End: Original strand, 32282926 - 32283501
Alignment:
| Q |
292 |
aattcggactcggcatgttaaagttcattaatactccacaagtgttttatagactcttcgtaaattcaacatcatttgaattcttagatgttccaaggta |
391 |
Q |
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| T |
32282926 |
aattcggactcggcatgttaaagttcattaatactccacaagtgttttatagactcttcgtaaattcaacatcatttgaattcttagatgttccaaggta |
32283025 |
T |
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| Q |
392 |
aaaatcctccaacggaaccttcaaggggtaaaccacggtcaatgtttatgtacttgaaattggttaaagaattctcacatgaaaaataacataaatgtag |
491 |
Q |
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| T |
32283026 |
aaaatcctccaacggaaccttcaaggggtgaaccacggtcaatgtt-atgtacttgaaattggtcaaagaattctcacatgaaaaataacataaatgtag |
32283124 |
T |
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| Q |
492 |
ttacaactgttcaaggttaaatgtcatttt-gttgggaccacggttcaccattcggacaataattctatgtctaggttttgtagttttcacgtaaaaggt |
590 |
Q |
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| T |
32283125 |
ttacaacattacaaggttaaatgtcatttttgttgggaccacggttcaccattcggacaataattctatgtctaggttttgtagttttcacgtaaaaagt |
32283224 |
T |
|
| Q |
591 |
aatgaatttatgtgtatcatattatgctatcttcttatggtcaatatcttgcatcagtcgcatttttactcgttttccacgttataaagatcttcaaggt |
690 |
Q |
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| T |
32283225 |
aatgaatttatgtgtatcatattatgctatcttcttatggtcaatatcttgcatcagtcgcatttttactcgttttccacgttataaagatcttcaaggt |
32283324 |
T |
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| Q |
691 |
aactgcaacaacaatttaaaataaaaatgggtgcattgtgtaatcgaggggaccattgcatggctatataggaaatgcattacttcttacatcatgcatc |
790 |
Q |
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| T |
32283325 |
aactgcaacaacaatttaaaataaaaaagggtgcattgtgtaatcgcgggggccattgcatggctatataggaaatgcattacttcttacatcatgcatc |
32283424 |
T |
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| Q |
791 |
aagaagaaagaagcaaaagcatctttttgcgaattttccatttgtcgaatacataatgaaacatttgatattcttgg |
867 |
Q |
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| T |
32283425 |
aagaagaaagaagcaaaagcatctctttgcgaattttccatttgtcgaatacataatgaaacatttgatattattgg |
32283501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 61
Target Start/End: Original strand, 32282676 - 32282706
Alignment:
| Q |
31 |
caagtccatataaattggatgctgagttttc |
61 |
Q |
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| T |
32282676 |
caagtccatataaattggatgctgagttttc |
32282706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 727 - 814
Target Start/End: Complemental strand, 25785891 - 25785800
Alignment:
| Q |
727 |
tgtgtaatcgaggggaccatt-gcatggctatataggaaatgcattacttcttacatcat---gcatcaagaagaaagaagcaaaagcatct |
814 |
Q |
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| T |
25785891 |
tgtgtaaacgaggggaccgtttgcatggctacagaggaagtgcattacttcatacatcatcaagcatcaagaagaaagaagaaaaagcatct |
25785800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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