View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7504_high_13 (Length: 464)

Name: NF7504_high_13
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7504_high_13
NF7504_high_13
[»] chr7 (1 HSPs)
chr7 (13-429)||(33791829-33792242)


Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 13 - 429
Target Start/End: Original strand, 33791829 - 33792242
Alignment:
Q  13 aaaattattatattatagatgactatgaatgtttaattatttt-gcaattacttggatttattcaaatattacattctacttaatttaattagaagtgtg 111  Q
    |||||||||||||||||||||||||||||| |||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33791829 aaaattattatattatagatgactatgaatttttacttttttttgcaattacttggatttattcaaatattacattctacttaatttaattagaagtgtg 33791928  T
Q  112 aatgataatatggagtgttcaattctatgttaaaatttggagtannnnnnn-aaaaagccaaacaaataagaaatataatacggaaaagattctcaatgt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33791929 aatgataatatggagtgttcaattctatgttaaaatttggagtattttttttaaaaagccaaacaaataagaaatataatacggaaaagattctcaatgt 33792028  T
Q  211 tattatnnnnnnnnnnnnnnnnnnnttctggcacacgtcaaaagaccttctaaaattttaaagtcattacttaagttacagatttgcgttatcaatctca 310  Q
    ||||||                   |||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  33792029 tattataaaaagaaacattt-----ttctcgcacacgtcaaaagaccttctaaaattttaaaatcattacttaagttacaggtttgcgttatcaatctca 33792123  T
Q  311 acattattaaaagaaatattagtcagcaaatttttaatctcctccgttaacacctcctcccatcaaaaaaggattcttctccaaccccatccttcacctc 410  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  33792124 acattattgaaagaaatattagtcagcaaatttctaatctcctccgttaacacctcctcccatcgaaaaaggattcttctccaactccatccttcacctc 33792223  T
Q  411 atcaaccacatttaacatt 429  Q
    |||||||||||||||||||    
T  33792224 atcaaccacatttaacatt 33792242  T

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