View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7504_high_16 (Length: 437)
Name: NF7504_high_16
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7504_high_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 164; Significance: 2e-87; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 77 - 376
Target Start/End: Original strand, 44044243 - 44044543
Alignment:
| Q |
77 |
gttcaaaaattatcagtagtataaatatcatttctcatggaacacgtgaacttcgcccaaacccgtttctttgcaaggccaaggggccagaattggggta |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
44044243 |
gttcaaaaattatcagtagtataaatatcatttttcacagaacatgtgaacttcggccaaacccgtttctttgcaag------gggccagaattggggta |
44044336 |
T |
|
| Q |
177 |
gcttcattgaatgctggggtccaatggttgtgatgtgtgatacacatgatcaacactttcttctaggtgcggtgcggggttatgcgtatcaatatcaccc |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
44044337 |
gcttcattgaatgctggggtccaatggttgtgatgtgtgatacacatgatcaacgctttcttcta------------ggttatgcgtatcaatatcaccc |
44044424 |
T |
|
| Q |
277 |
cttaatggtttcctt---------------gta----cactcaagttgttcaacaatcaacaatatggagtaaaggaattcaataatttgtatttttaaa |
357 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44044425 |
cttaatggtttccttttctttgtcatttcagtacactcactcaagttgttcaacaatcaacaatatggagtaaaggaattcaataatttgtatttttaaa |
44044524 |
T |
|
| Q |
358 |
ataattaaataacatatat |
376 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
44044525 |
ataattaaataacatatat |
44044543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 420
Target Start/End: Original strand, 44044541 - 44044571
Alignment:
| Q |
390 |
tataaataattgtgacgtcctagtgttttct |
420 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
44044541 |
tataaataattgtgacgtcctagtgttttct |
44044571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 73
Target Start/End: Original strand, 44044173 - 44044202
Alignment:
| Q |
44 |
taaataatatatatgagtatgaaatagaga |
73 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
44044173 |
taaataatatatatgagtatgaaatagaga |
44044202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 376
Target Start/End: Complemental strand, 46514207 - 46514171
Alignment:
| Q |
340 |
ataatttgtatttttaaaataattaaataacatatat |
376 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
46514207 |
ataatgtgtatttttaaaataattaaataatatatat |
46514171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University