View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7504_high_17 (Length: 431)
Name: NF7504_high_17
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7504_high_17 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 18 - 431
Target Start/End: Complemental strand, 48574904 - 48574491
Alignment:
| Q |
18 |
agggtcctcatggaatcgatagtccctgtctcgagcactcctatattgaagtcggtgatgtagtgtctcagacatctggttgaaaaattcagcatcccat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
48574904 |
agggtcctcatggaatcgatagtccctgtctcgagcactcctatattgaagtcggtgatgtagtgtctcagacatcttgttgaaaaattcagcatcccat |
48574805 |
T |
|
| Q |
118 |
ctctaaatcaataaagggtcttctgcataggaaatatatatcgatgtaacaacactctccaccacaaccattgccaatccaacctgaaaacaaagttaca |
217 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48574804 |
ctctgaatcaataaagggtcttctgcataggaaatatatatcgatgtaacaacactctccaccacaaccattgccaatccaacctgaaaacaaagttaca |
48574705 |
T |
|
| Q |
218 |
tatttcacgttcacacaagacaaataactaacttaatgcatgtttgaaatcacggagaatttaacaaaatcactggacactgatttcgttgaagctctaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
48574704 |
tatttcacgttcacacaagacaaataactaacttaatgcatgtttgaaatcacggagaatttaacaaaatcactggacaccgatttctttgaagctctaa |
48574605 |
T |
|
| Q |
318 |
agtataatctttacaaaaatcacgttggcataccgtgatcctatcaaactaacagtcaatccaaacatgtgtttaaagatttaaggagattggaacttac |
417 |
Q |
| |
|
|||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48574604 |
agtataatttttacaaaaatcaaggtggcataccgtgatcctatcaaactaacagtcaatccaaacatgtgtttaaagatttaaggagattggaacttac |
48574505 |
T |
|
| Q |
418 |
caatcataataact |
431 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
48574504 |
caattataataact |
48574491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 420
Target Start/End: Original strand, 50298034 - 50298437
Alignment:
| Q |
18 |
agggtcctcatggaatcgatagtccctgtctcgagcactcctatattgaagtcggtgatgtagtgtctcagacatctggttgaaaaattcagcatcccat |
117 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50298034 |
agggtcatcatggaatcgatagtccctggctcgagcactcctatattgaagtcggtgatgtagtgtctcagacatctggttgaaaaattcagcatcccat |
50298133 |
T |
|
| Q |
118 |
ctctaaatcaataaagggtcttctgcataggaaatatatatcgatgtaacaacactctccaccacaaccattgccaatccaacctgaaaacaaagttaca |
217 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
50298134 |
ctctgaatcaataaagggtcttctgcatagcaaatatatatcgatgtaacagcactctccaccacaaccattgccaatccaacctgaaaacaaatttact |
50298233 |
T |
|
| Q |
218 |
tatttcacgttcacacaagacaaataactaacttaatgcatgtttgaaatcacggagaatttaacaaaatcactg-gacactgatttcgttgaagctcta |
316 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
50298234 |
tatttcatgttcacacaagaaaaataactaacttaatgcatgtttaaaatcacggagaatttaacaaaatcaccgtgacactgatttcgttgaagctcta |
50298333 |
T |
|
| Q |
317 |
aagtataatctttacaaaaatcacgttggcataccgtgatcctatcaaactaacagtcaatccaaacatgtgtttaaagatttaaggagattggaactta |
416 |
Q |
| |
|
||||||| | ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50298334 |
aagtatactttttacaaaaatcacggtggcataccgtgattctatcaaactaacagtcaatccaaacatgtgtttaaagatttaaggagattggaactta |
50298433 |
T |
|
| Q |
417 |
ccaa |
420 |
Q |
| |
|
|||| |
|
|
| T |
50298434 |
ccaa |
50298437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 363
Target Start/End: Complemental strand, 45150030 - 45149685
Alignment:
| Q |
18 |
agggtcctcatggaatcgatagtccctgtctcgagcactcctatattgaagtcggtgatgtagtgtctcagacatctggttgaaaaattcagcatcccat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45150030 |
agggtcctcatggaatcgatagtccctggctcgagcactcctatattgaagtcggtgatgtagtgtctcagacatctggttgaaaaattcagcatcccat |
45149931 |
T |
|
| Q |
118 |
ctctaaatcaataaagggtcttctgcataggaaatatatatcgatgtaacaacactctccaccacaaccattgccaatccaacctgaaaacaaagttaca |
217 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45149930 |
ctctgaatcaataaagggtcttctgcataggaaatatatatcgatgtaacaacactctccaccacaaccattgccaatccaacctgaaaacaaagttaca |
45149831 |
T |
|
| Q |
218 |
tatttcacgttcacacaagacaaataactaacttaatgcatgtttgaaatcacggagaatttaacaaaatcactggacactgatttcgttgaagctctaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
45149830 |
tatttcacgttcacacaagacaaataactaacttaatgcatgtttgaaatcacggagaatttaacaaaatcactggacaccgatttcgttgaagctctaa |
45149731 |
T |
|
| Q |
318 |
agtataatctttacaaaaatcacgttggcataccgtgatcctatca |
363 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
45149730 |
agtataaattttacaaaaatcacggtggcataccgtgatcctatca |
45149685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 55 - 207
Target Start/End: Complemental strand, 22576875 - 22576723
Alignment:
| Q |
55 |
ctcctatattgaagtcggtgatgtagtgtctcagacatctggttgaaaaattcagcatcccatctctaaatcaataaagggtcttctgcataggaaatat |
154 |
Q |
| |
|
||||||| ||||||||| || || | |||||| || |||||||||||||| ||| |||||||||| ||||||||| |||||||| ||||| | |||| |
|
|
| T |
22576875 |
ctcctatgttgaagtcgctggtgcaatgtctcggaaatctggttgaaaaactcatggtcccatctctgaatcaataatgggtcttccgcataacagatat |
22576776 |
T |
|
| Q |
155 |
atatcgatgtaacaacactctccaccacaaccattgccaatccaacctgaaaa |
207 |
Q |
| |
|
|||| ||||| || |||| ||||||||||||||||||| |||||||| |||| |
|
|
| T |
22576775 |
atatggatgtcactgcactttccaccacaaccattgccactccaacctaaaaa |
22576723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University