View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7504_high_19 (Length: 417)
Name: NF7504_high_19
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7504_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 16 - 401
Target Start/End: Complemental strand, 5086608 - 5086223
Alignment:
| Q |
16 |
atcaaagataattatttaatggttgggggtcatttaagaaaacaagatgaagaaaataattaatcaccttgtaaactgaccgaaaactacattttccaat |
115 |
Q |
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| T |
5086608 |
atcaaggataattatttaatggttgggggtcatttaagaaaacaagatgaagaaaataatttatcaccttgtaaactgaccgaaaactacattttccgat |
5086509 |
T |
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| Q |
116 |
attataagcatttgagaaatggtcaatagccgcttgtatgctgtcaatatcaaacaggaggacatctgttccttcatcgtcatcattgaattacagaaga |
215 |
Q |
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| T |
5086508 |
attataagcatttgagaaatggtcaatagccgcttgtatgctgtcaatatcaaacaggaggacatctgttccttcatcgtcatcattgaattacagaaga |
5086409 |
T |
|
| Q |
216 |
ggtaaaaaagagtaacagtttgcagagaaaattggagcaacacaagaaagatcttcagcttgataccctcattgaagagcagtttggtggtggacgattg |
315 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5086408 |
ggtaaaaaagagtaacagtgtgcagagaaaattggagcaacgcaagaaagatcttcagcttgataccctcattgaagagcagtttggtggtggacgattg |
5086309 |
T |
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| Q |
316 |
cttgcatgaatttcttctcgaccaggtcgatgtggcagagctgatggataattgtattgtcattttgttgctgatttgcttttatt |
401 |
Q |
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| T |
5086308 |
cttgcatgaatttcttctcgaccaggtcgatgtggcagagctgatggataattgtattgtcattttgttgctgatttgcttttatt |
5086223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 23 - 203
Target Start/End: Original strand, 5098327 - 5098507
Alignment:
| Q |
23 |
ataattatttaatggttgggggtcatttaagaaaacaagatgaagaaaataattaatcaccttgtaaactgaccgaaaactacattttccaatattataa |
122 |
Q |
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| T |
5098327 |
ataattattcaatggttgggggtcatttgagaaaataagataaagaaaataattaatcaccttgtaaactgaccaaaaaccacattttccaagattataa |
5098426 |
T |
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| Q |
123 |
gcatttgagaaatggtcaatagccgcttgtatgctgtcaatatcaaacaggaggacatctgttccttcatcgtcatcattg |
203 |
Q |
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| T |
5098427 |
gcgtttgagaaatggtcgatagccgcttgtatgctgtcaagatcaaatagggggacatctattccttcattgtcatcattg |
5098507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 217 - 401
Target Start/End: Complemental strand, 5094928 - 5094745
Alignment:
| Q |
217 |
gtaaaaaagagtaacagtttgcagagaaaattggagcaacacaagaaagatcttcagcttgataccctcattgaagagcagtttggtggtggacgattgc |
316 |
Q |
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|||||||||||||||| ||||||| |||||||| |||| | ||||||||| || |||||||||||||||||||| |||||||| ||| |||||||| | |
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| T |
5094928 |
gtaaaaaagagtaacaaagtgcagaggaaattggaacaacgccagaaagatcgtcggcttgataccctcattgaagcgcagtttgctggcggacgattac |
5094829 |
T |
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| Q |
317 |
ttgcatgaatttcttctcgaccaggtcgatgtggcagagctgatggataattgtattgtcattttgttgctgatttgcttttatt |
401 |
Q |
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| T |
5094828 |
ttgcatgcatttcttctcaaccaggtctatgtggcagagct-atgggcaattgtattgtcattttgttgctaatttgcttttatt |
5094745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 206 - 392
Target Start/End: Complemental strand, 5108142 - 5107953
Alignment:
| Q |
206 |
ttacagaagaggtaaaaaagagtaacagtttgcagagaaaattggagcaacacaagaaagatcttcagcttgataccctcattgaagagcagtttggtgg |
305 |
Q |
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|||||||||| ||||||||||| |||| | | ||||||||||||||||||| | ||||||||| || ||| ||| |||| ||||||| |||||||||||| |
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| T |
5108142 |
ttacagaagaagtaaaaaagagcaacaatgtacagagaaaattggagcaacgccagaaagatcgtcggctggatccccttattgaagtgcagtttggtgg |
5108043 |
T |
|
| Q |
306 |
tggacgattgcttgcatgaatttcttctcgaccaggtcgatgtggcagagctgatggataa---ttgtattgtcattttgttgctgattt |
392 |
Q |
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| T |
5108042 |
tggacgattgcttgcctgcatttcttctcgacctggtcaatgtggcagagctgacgggtaatgcttgtattgtcattttcttgctgattt |
5107953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 206 - 401
Target Start/End: Complemental strand, 5104594 - 5104393
Alignment:
| Q |
206 |
ttacagaagaggtaaaaaagagtaacagtttgcagagaaaattggagcaacacaagaaagatcttcagcttgata---ccctcattgaagagcagtttgg |
302 |
Q |
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||||||| || |||||||| ||||||| | ||||||||||||||||||||| | |||||||| || ||| |||| || | |||||||||||||| || |
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| T |
5104594 |
ttacagacgaagtaaaaaatagtaacaatgtgcagagaaaattggagcaacgccagaaagataatcggctggatattcccgtaattgaagagcagttggg |
5104495 |
T |
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| Q |
303 |
tggtggacgattgcttgcatgaatttcttctcgaccaggtcgatgtggcagagctgatggataa---ttgtattgtcattttgttgctgatttgctttta |
399 |
Q |
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|||||||||||||||||| || |||||||||||||| |||| |||||||| |||||| || ||| ||||||||| |||||||| ||||||| |||||| |
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| T |
5104494 |
tggtggacgattgcttgcttgcatttcttctcgacctggtcaatgtggcacagctgacgggtaatgcttgtattgtaattttgtttctgattttctttta |
5104395 |
T |
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| Q |
400 |
tt |
401 |
Q |
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|| |
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| T |
5104394 |
tt |
5104393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 207 - 362
Target Start/End: Complemental strand, 3481064 - 3480909
Alignment:
| Q |
207 |
tacagaagaggtaaaaaagagtaacagtttgcagagaaaattggagcaacacaagaaagatcttcagcttgataccctcattgaagagcagtttggtggt |
306 |
Q |
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||||||||| || ||||||||| | | ||||||||||||| ||||||| | ||||||| | ||||||||| ||| |||||| ||||||||||||||| |
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| T |
3481064 |
tacagaagaagtcaaaaagagtgcccatgtgcagagaaaattagagcaacgccagaaagaacgccagcttgatgcccacattgaggagcagtttggtggt |
3480965 |
T |
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| Q |
307 |
ggacgattgcttgcatgaatttcttctcgaccaggtcgatgtggcagagctgatgg |
362 |
Q |
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||||||||||||||||| |||||||||||||| |||| ||| |||||||||||||| |
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| T |
3480964 |
ggacgattgcttgcatgcatttcttctcgacctggtcaatgcggcagagctgatgg |
3480909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 220 - 362
Target Start/End: Complemental strand, 3487386 - 3487244
Alignment:
| Q |
220 |
aaaaagagtaacagtttgcagagaaaattggagcaacacaagaaagatcttcagcttgataccctcattgaagagcagtttggtggtggacgattgcttg |
319 |
Q |
| |
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|||||||||||| | ||| ||| ||||||||| | | | ||||||||| ||||| ||| | | |||||||||||||||||||||||||||||| |||| |
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| T |
3487386 |
aaaaagagtaaccatgtgctgaggaaattggagaatcgcgagaaagatcgccagctcgatgctcacattgaagagcagtttggtggtggacgattacttg |
3487287 |
T |
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| Q |
320 |
catgaatttcttctcgaccaggtcgatgtggcagagctgatgg |
362 |
Q |
| |
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| || |||||||||||||| |||| ||||||||| |||||||| |
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| T |
3487286 |
cgtgcatttcttctcgacctggtcaatgtggcagggctgatgg |
3487244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 274 - 362
Target Start/End: Complemental strand, 18835449 - 18835361
Alignment:
| Q |
274 |
cttgataccctcattgaagagcagtttggtggtggacgattgcttgcatgaatttcttctcgaccaggtcgatgtggcagagctgatgg |
362 |
Q |
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|||||| ||| ||| ||||||||||||||||||||||| |||||||| || ||||| || || || |||| ||||||||| |||||||| |
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| T |
18835449 |
cttgattcccacatcgaagagcagtttggtggtggacgtttgcttgcctgcatttcatcacgccctggtcaatgtggcagggctgatgg |
18835361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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