View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7504_high_20 (Length: 415)
Name: NF7504_high_20
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7504_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Original strand, 24095039 - 24095439
Alignment:
| Q |
1 |
gttatgttctaggattaaaagtgaaggtggcatctattgaaatttagttgtgatttgaaggagaagtttggaatgagagaaggataatttttcacattta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
24095039 |
gttatgttctaggattaaaagtgaaggtggcatctattgaaagttagttgtgatttgaaggagaagtttggaatgagagaaggataatttttgacattta |
24095138 |
T |
|
| Q |
101 |
tatttagaaaattgagaagtgtttgcaaaagttatcaactcaggggaacatttacttaatatggaaaaccatatcttctaaatgactttgcaatgtaata |
200 |
Q |
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| T |
24095139 |
tatttagaaaattgagaagtgtttgcaaaagttatcaactcaggggaacatttacttaatatggaaaatcatatcttctaaatgactttgcaatgtaata |
24095238 |
T |
|
| Q |
201 |
catagggctaatgcaggaacaatagataagcaacatgactagtgaagtttgaatccttcgatcatatcttagttatcttgattgttttgggaatttaata |
300 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
24095239 |
catagggctaatacaggaacaatagataagcaacatgactagtgaagtttgaatccttcgatcatatcatagttatcttgattgttttgggaatttaata |
24095338 |
T |
|
| Q |
301 |
cttattagctgccttaaaatttttccttaagccagcatttggcgctaatttggtaattgaaagaaattaagtttccgcgcttttgtaaaataactaccac |
400 |
Q |
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|||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24095339 |
cttattagctgccttaaaatttcaccttaagcctgcatttggcgctaatctggtaattgaaagaaattaagtttccgcgcttttgtaaaataactaccac |
24095438 |
T |
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| Q |
401 |
a |
401 |
Q |
| |
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| T |
24095439 |
a |
24095439 |
T |
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