View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7504_high_21 (Length: 410)
Name: NF7504_high_21
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7504_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 27980996 - 27981400
Alignment:
| Q |
1 |
acgaaatcatagaacttgttggctttttgaactcaggattgagaacacttgctcaagaagaatgttaattttcagctaagatttcaagaatattatctat |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
27980996 |
acgaaatcatagaacttgttgactttttgaactcaggattgagaacacttgctcaagaagaatgttaattttcaactaagatttcaagaatattatctat |
27981095 |
T |
|
| Q |
101 |
cataattgatgaaacaagaatattcacannnnnnnngttaataaaaatgcttgtatttcactatgcaacaatgatatttggacatcccaaatatgtaagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27981096 |
cataattgatgaaacaagaatattcacattttttttgttaataaaaatgcttgtatttcactatgcaacaatgatatttggacatcccaaatatgtaagg |
27981195 |
T |
|
| Q |
201 |
ggaaaacgatttcttattcattcaagttggaaatacaatagt-ggatacctatttatagcaaaagcatccaagtaactaagttagcttgctttacaagta |
299 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27981196 |
ggaaaacgatttgttattcattcaagttggaaatacaatagttggatacctatttatagcaaaagcatccaagtaactaagttagcttgctttacaagta |
27981295 |
T |
|
| Q |
300 |
actgagctgaaagagaaccttgttcttacaagttagcttgcttctgagcatactcctcaccatgttcttcaaggtcctattctttctttcagtacgtaac |
399 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27981296 |
actgagctgaaagagaactttgttcttacaagttagcttgcttctgagcatactcctcaccatgttcttcaaggtcctattctttctttcagtacgtaac |
27981395 |
T |
|
| Q |
400 |
accat |
404 |
Q |
| |
|
||||| |
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|
| T |
27981396 |
accat |
27981400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 28038298 - 28038702
Alignment:
| Q |
1 |
acgaaatcatagaacttgttggctttttgaactcaggattgagaacacttgctcaagaagaatgttaattttcagctaagatttcaagaatattatctat |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
28038298 |
acgaaatcatagaacttgttgactttttgaactcaggattgagaacacttgctcaagaagaatgttaattttcaactaagatttcaagaatattatctat |
28038397 |
T |
|
| Q |
101 |
cataattgatgaaacaagaatattcacannnnnnnngttaataaaaatgcttgtatttcactatgcaacaatgatatttggacatcccaaatatgtaagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28038398 |
cataattgatgaaacaagaatattcacattttttttgttaataaaaatgcttgtatttcactatgcaacaatgatatttggacatcccaaatatgtaagg |
28038497 |
T |
|
| Q |
201 |
ggaaaacgatttcttattcattcaagttggaaatacaatagt-ggatacctatttatagcaaaagcatccaagtaactaagttagcttgctttacaagta |
299 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28038498 |
ggaaaacgatttgttattcattcaagttggaaatacaatagttggatacctatttatagcaaaagcatccaagtaactaagttagcttgctttacaagta |
28038597 |
T |
|
| Q |
300 |
actgagctgaaagagaaccttgttcttacaagttagcttgcttctgagcatactcctcaccatgttcttcaaggtcctattctttctttcagtacgtaac |
399 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28038598 |
actgagctgaaagagaactttgttcttacaagttagcttgcttctgagcatactcctcaccatgttcttcaaggtcctattctttctttcagtacgtaac |
28038697 |
T |
|
| Q |
400 |
accat |
404 |
Q |
| |
|
||||| |
|
|
| T |
28038698 |
accat |
28038702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 27887680 - 27887950
Alignment:
| Q |
1 |
acgaaatcatagaacttgttggctttttgaactcaggattgagaacacttgctcaagaagaatgttaattttcagctaagatttcaagaatattatctat |
100 |
Q |
| |
|
|||||| | ||||||| |||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27887680 |
acgaaaccgtagaactatttggatttttgaacttgggattgagaacacttgctcgagaagaatgttaattttcagctaagatttcaagaatattatctat |
27887779 |
T |
|
| Q |
101 |
cataattgatgaaacaagaatattcacannnnnnnngttaataaaaatgcttgtatttcactatgcaacaatgatatttggacatcccaaatatgtaagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27887780 |
cataattgatgaaacaagaatattcatattttttt-gttaataaaaatgcttgtatttcactatgcaacaatgatagttggacatcccaaatatgtaaac |
27887878 |
T |
|
| Q |
201 |
ggaaaacgatttcttattcattcaagttggaaatacaatag-tggatacctatttatagcaaaagcatccaa |
271 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
27887879 |
ggaaaacgatttgttattcattcaagttggaaatacaatagttggatacctatttatagcaaaagtatccaa |
27887950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 27946338 - 27946608
Alignment:
| Q |
1 |
acgaaatcatagaacttgttggctttttgaactcaggattgagaacacttgctcaagaagaatgttaattttcagctaagatttcaagaatattatctat |
100 |
Q |
| |
|
|||||| | ||||||| |||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27946338 |
acgaaaccgtagaactatttggatttttgaacttgggattgagaacacttgctcgagaagaatgttaattttcagctaagatttcaagaatattatctat |
27946437 |
T |
|
| Q |
101 |
cataattgatgaaacaagaatattcacannnnnnnngttaataaaaatgcttgtatttcactatgcaacaatgatatttggacatcccaaatatgtaagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27946438 |
cataattgatgaaacaagaatattcatattttttt-gttaataaaaatgcttgtatttcactatgcaacaatgatagttggacatcccaaatatgtaaac |
27946536 |
T |
|
| Q |
201 |
ggaaaacgatttcttattcattcaagttggaaatacaatag-tggatacctatttatagcaaaagcatccaa |
271 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
27946537 |
ggaaaacgatttgttattcattcaagttggaaatacaatagttggatacctatttatagcaaaagtatccaa |
27946608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 28026581 - 28026851
Alignment:
| Q |
1 |
acgaaatcatagaacttgttggctttttgaactcaggattgagaacacttgctcaagaagaatgttaattttcagctaagatttcaagaatattatctat |
100 |
Q |
| |
|
|||||| | ||||||| |||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28026581 |
acgaaaccgtagaactatttggatttttgaacttgggattgagaacacttgctcgagaagaatgttaattttcagctaagatttcaagaatattatctat |
28026680 |
T |
|
| Q |
101 |
cataattgatgaaacaagaatattcacannnnnnnngttaataaaaatgcttgtatttcactatgcaacaatgatatttggacatcccaaatatgtaagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28026681 |
cataattgatgaaacaagaatattcatattttttt-gttaataaaaatgcttgtatttcactatgcaacaatgatagttggacatcccaaatatgtaaac |
28026779 |
T |
|
| Q |
201 |
ggaaaacgatttcttattcattcaagttggaaatacaatag-tggatacctatttatagcaaaagcatccaa |
271 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
28026780 |
ggaaaacgatttgttattcattcaagttggaaatacaatagttggatacctatttatagcaaaagtatccaa |
28026851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 245 - 303
Target Start/End: Complemental strand, 16866753 - 16866695
Alignment:
| Q |
245 |
atacctatttatagcaaaagcatccaagtaactaagttagcttgctttacaagtaactg |
303 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
16866753 |
atacctatttatagtaaaagtatccaagtaactaagttagcttgcattacaagttactg |
16866695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 7431872 - 7431928
Alignment:
| Q |
242 |
tggatacctatttatagcaaaagcatccaagtaactaagttagcttgctttacaagt |
298 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||| |||||||| |||||||| |
|
|
| T |
7431872 |
tggatacctatttatagtaaaagtatccaagtaactaagctagcttgcattacaagt |
7431928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 303
Target Start/End: Complemental strand, 16862508 - 16862447
Alignment:
| Q |
242 |
tggatacctatttatagcaaaagcatccaagtaactaagttagcttgctttacaagtaactg |
303 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||| ||||||| |||||||| |||| |
|
|
| T |
16862508 |
tggatacctatttatagtaaaagtatccaagtaactaagctagcttgtattacaagttactg |
16862447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 302
Target Start/End: Original strand, 5145746 - 5145779
Alignment:
| Q |
269 |
caagtaactaagttagcttgctttacaagtaact |
302 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |
|
|
| T |
5145746 |
caagtaactaagctagcttgctttacaagtaact |
5145779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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