View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7504_high_23 (Length: 400)
Name: NF7504_high_23
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7504_high_23 |
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| [»] scaffold0596 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 39 - 380
Target Start/End: Complemental strand, 7472053 - 7471706
Alignment:
| Q |
39 |
atgtgtgaaacaccatgtaagagacggggatgaatgaaacacttttnnnnnnncgtgttctttttaacacgagaagtgaatgcaaatacatggatagagc |
138 |
Q |
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| T |
7472053 |
atgtgtgaaacaccatgtaagagacggggacgaatgaaacacttttaaaaaaacgtgttctttttaacacgagaagtgaatgcaaatacatggatagagc |
7471954 |
T |
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| Q |
139 |
cgctcgaaatcccaatacttccaaattttatacaaatgtaacataaaatgaaaa-gagaagaatagaggcaat------gtgatttcattaagaaaaaca |
231 |
Q |
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| T |
7471953 |
cgctcgaaattccaatacttccaatttttataaaaatgtaacataaaatgaaaaagagaaga-tggaaatgattttgttgtgatttcattaagaaaaata |
7471855 |
T |
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| Q |
232 |
gaggcaatgtatatacaaatacatatctctaattttatggttatgctcatataactcaacaatctattcctacaatcaaactattcttacacgattgtta |
331 |
Q |
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| T |
7471854 |
gaggcaatgtatatacaaatacatatctctaattttatggttatgctcctataactcaacaatctattcctacaatcaaactattcttatacgattgtta |
7471755 |
T |
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| Q |
332 |
ccatatttacggcatgaatcatggaatatacttggctttcctaatactt |
380 |
Q |
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| T |
7471754 |
ccatatttacggcatgaatcatggaatatacttggctttccttatactt |
7471706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 241 - 318
Target Start/End: Original strand, 19665838 - 19665915
Alignment:
| Q |
241 |
tatatacaaatacatatctctaattttatggttatgctcatataactcaacaatctattcctacaatcaaactattct |
318 |
Q |
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| T |
19665838 |
tatacacaaatacatatctctaatttgatgattatgcttctatagctcatcaatctattcctataatcaagctattct |
19665915 |
T |
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Target: scaffold0596 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 5682 - 5599
Alignment:
| Q |
235 |
gcaatgtatatacaaatacatatctctaattttatggttatgctcatataactcaacaatctattcctacaatcaaactattct |
318 |
Q |
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| T |
5682 |
gcaatatatacacagatacatatctctaatgtgatgattatgctgttataactcagcaatatattcctacaatcaagctattct |
5599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 47753178 - 47753095
Alignment:
| Q |
235 |
gcaatgtatatacaaatacatatctctaattttatggttatgctcatataactcaacaatctattcctacaatcaaactattct |
318 |
Q |
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| T |
47753178 |
gcaatatatacacatatacatatctctaatgtgttgattatgctgttataactcagcaatatattcctacaatcaagctattct |
47753095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 318
Target Start/End: Original strand, 39037169 - 39037237
Alignment:
| Q |
250 |
atacatatctctaattttatggttatgctcatataactcaacaatctattcctacaatcaaactattct |
318 |
Q |
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| T |
39037169 |
atacatatctctaatgtgttgattatgctgttataactcagcaatatattcctacaatcaagctattct |
39037237 |
T |
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