View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7504_high_25 (Length: 395)
Name: NF7504_high_25
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7504_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 11 - 378
Target Start/End: Original strand, 52025655 - 52026022
Alignment:
| Q |
11 |
agaaaatgatgaggaagttgtatttttgcggatgttccctcattcacttataagtaaatctaaatacatgtgtgtgaaccaaaattttaaaataatgaaa |
110 |
Q |
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| T |
52025655 |
agaatatgacgaggaagttgtatttttgcggatgttccctcattcacttataagtaaatctaaatacatgtatgtgaaccaaaattttaagataatgaaa |
52025754 |
T |
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| Q |
111 |
gattggaatgcactttaggagaaatttttcagcaagttttttccatgtaacaagttcatggaggctaagcgaaatgttgttgtgttctattatggttcaa |
210 |
Q |
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| T |
52025755 |
gattggaatgcactttaggagaaatttttcagcaagttctttccatgtaacaagttcatggaggctaagagaattgttgttgtgttctattatggttcaa |
52025854 |
T |
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| Q |
211 |
ctagaccattttgtgaagcatgagagagatacaaggccgtgttgaggagatgtcattactttgggttccaggagctcatttaaatacatatctttcgcac |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
52025855 |
ctagaccattttgtgaagcatgagagagatacaaggccgtgttgagaagatgtcattactttgggttcgaggagctcatttaaatacatatctttcacac |
52025954 |
T |
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| Q |
311 |
tttttatataacaaactagtggctcaaaagtatgttgagcataagagataaaatagaaaacttagaag |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
52025955 |
tttttatataacaaactagtggctcaaaagtatgttgagcattagagataaaatagaaaacttggaag |
52026022 |
T |
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