View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7504_high_31 (Length: 349)
Name: NF7504_high_31
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7504_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 34697481 - 34697804
Alignment:
| Q |
1 |
aactcctatttttcaaaccttgtgcttgtttcttgatttgaataaaatttagcatatttggattgactttaagttcgataaaattacattgacatcgtga |
100 |
Q |
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| T |
34697481 |
aactcctatgtttcaaaccttgtgcttgtttcttgatttgaataaaatttaacatatttggattgactttaagttcgataaaattacattggcatcgtga |
34697580 |
T |
|
| Q |
101 |
ttttgtgaagctcgaaagtgtatagcttttgctaagatcatagtgtctcattgtgatatgtcaatctaaacttgtactactttgtgtgtgttttatacaa |
200 |
Q |
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| T |
34697581 |
ttttgtgaagctcgaaagtgtatagcttttgctaagatcatagtgtctcattgtgatatgtcaatctaaacttg---tactttgtgtgtgttttatacaa |
34697677 |
T |
|
| Q |
201 |
tatgtaccatgacctttaaagtgtacaatatcttatctcaattttattgcaaccaaaccatccccaccgttgtaaattctagcatcattctctaggagca |
300 |
Q |
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| T |
34697678 |
tatgtaccaagacctctaaagtgtacaatatcttatctcaa-tttattgc-----aaccatccccaccgttgtaaattctagcatcattctctaggagca |
34697771 |
T |
|
| Q |
301 |
gcatttagtgatatcatttgtaaccttttattt |
333 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
34697772 |
gcatttagtgatatcatttgtaaccttttattt |
34697804 |
T |
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