View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7504_high_33 (Length: 342)

Name: NF7504_high_33
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7504_high_33
NF7504_high_33
[»] chr8 (22 HSPs)
chr8 (1-329)||(27789172-27789504)
chr8 (128-185)||(32272670-32272727)
chr8 (120-185)||(8793760-8793825)
chr8 (120-185)||(10839804-10839869)
chr8 (121-185)||(36191790-36191852)
chr8 (120-184)||(3236372-3236436)
chr8 (120-185)||(10184593-10184658)
chr8 (121-185)||(6189673-6189737)
chr8 (121-180)||(8818696-8818755)
chr8 (121-185)||(10107317-10107377)
chr8 (120-185)||(8793761-8793826)
chr8 (128-183)||(13826985-13827037)
chr8 (120-185)||(16448831-16448896)
chr8 (120-185)||(24619000-24619065)
chr8 (120-185)||(32549733-32549798)
chr8 (120-185)||(33057908-33057973)
chr8 (120-185)||(42123008-42123073)
chr8 (120-184)||(5031506-5031570)
chr8 (96-152)||(9503612-9503668)
chr8 (120-184)||(27789321-27789385)
chr8 (120-184)||(27976764-27976828)
chr8 (120-184)||(28034033-28034097)
[»] chr7 (24 HSPs)
chr7 (121-183)||(35436265-35436327)
chr7 (120-185)||(8566123-8566188)
chr7 (120-185)||(36245418-36245483)
chr7 (124-185)||(40324689-40324750)
chr7 (120-185)||(41850637-41850702)
chr7 (120-183)||(39153329-39153392)
chr7 (120-185)||(5761796-5761861)
chr7 (120-185)||(6838416-6838481)
chr7 (120-185)||(28677359-28677424)
chr7 (120-185)||(28954017-28954082)
chr7 (120-184)||(2610229-2610293)
chr7 (120-184)||(7430086-7430150)
chr7 (121-185)||(27163204-27163268)
chr7 (129-185)||(32811760-32811816)
chr7 (120-180)||(40364622-40364682)
chr7 (110-185)||(43813162-43813237)
chr7 (83-181)||(4132428-4132526)
chr7 (123-185)||(29365666-29365728)
chr7 (120-185)||(10462418-10462483)
chr7 (136-185)||(30869244-30869293)
chr7 (120-185)||(48838353-48838418)
chr7 (120-184)||(11668057-11668121)
chr7 (120-184)||(34117981-34118045)
chr7 (121-185)||(39153328-39153392)
[»] chr3 (24 HSPs)
chr3 (121-185)||(32711245-32711309)
chr3 (111-183)||(42896185-42896257)
chr3 (124-184)||(2312963-2313023)
chr3 (102-183)||(32711245-32711326)
chr3 (120-181)||(48593187-48593248)
chr3 (111-183)||(2544501-2544574)
chr3 (120-185)||(19649621-19649686)
chr3 (120-185)||(29290819-29290884)
chr3 (96-184)||(33068230-33068318)
chr3 (128-183)||(54273438-54273493)
chr3 (121-183)||(42896185-42896247)
chr3 (149-183)||(42898405-42898439)
chr3 (120-185)||(9236128-9236193)
chr3 (121-170)||(16269810-16269859)
chr3 (120-185)||(19649620-19649685)
chr3 (120-185)||(21662927-21662992)
chr3 (111-184)||(29290811-29290884)
chr3 (128-185)||(30672550-30672607)
chr3 (120-185)||(44518077-44518142)
chr3 (134-178)||(9141135-9141179)
chr3 (129-185)||(23223009-23223065)
chr3 (111-183)||(28406500-28406572)
chr3 (121-185)||(43448999-43449063)
chr3 (120-184)||(53441949-53442013)
[»] chr6 (20 HSPs)
chr6 (121-183)||(24985975-24986037)
chr6 (120-184)||(7649841-7649905)
chr6 (120-185)||(7649840-7649905)
chr6 (126-183)||(24089737-24089794)
chr6 (111-184)||(28630795-28630868)
chr6 (109-181)||(1158276-1158348)
chr6 (126-185)||(29168529-29168588)
chr6 (125-179)||(7384778-7384832)
chr6 (110-184)||(16121003-16121077)
chr6 (120-185)||(3064924-3064989)
chr6 (120-180)||(27909021-27909081)
chr6 (120-180)||(30627869-30627929)
chr6 (123-185)||(1158286-1158348)
chr6 (111-185)||(14173427-14173501)
chr6 (111-185)||(14177963-14178037)
chr6 (121-183)||(20703443-20703505)
chr6 (120-185)||(8920491-8920556)
chr6 (120-185)||(24265513-24265578)
chr6 (124-184)||(8381002-8381062)
chr6 (120-180)||(30732414-30732473)
[»] chr4 (28 HSPs)
chr4 (111-185)||(26066410-26066484)
chr4 (136-185)||(30206526-30206575)
chr4 (124-184)||(43117900-43117960)
chr4 (120-183)||(32645533-32645596)
chr4 (120-185)||(53225686-53225751)
chr4 (121-185)||(32645533-32645597)
chr4 (84-170)||(2401042-2401128)
chr4 (120-185)||(30191937-30192002)
chr4 (111-184)||(36491063-36491136)
chr4 (120-185)||(48361093-48361158)
chr4 (121-184)||(48195932-48195995)
chr4 (121-183)||(3345360-3345422)
chr4 (123-185)||(16412275-16412337)
chr4 (111-181)||(20114104-20114174)
chr4 (121-183)||(26165941-26166003)
chr4 (111-185)||(39897146-39897220)
chr4 (120-185)||(21554151-21554215)
chr4 (120-185)||(26066411-26066476)
chr4 (116-185)||(43117895-43117964)
chr4 (121-185)||(13412699-13412763)
chr4 (120-180)||(17284777-17284837)
chr4 (125-185)||(22235303-22235363)
chr4 (120-184)||(25477587-25477651)
chr4 (129-185)||(44111796-44111852)
chr4 (129-185)||(45828466-45828522)
chr4 (121-185)||(46462417-46462481)
chr4 (121-185)||(52760280-52760344)
chr4 (120-180)||(52768754-52768813)
[»] chr5 (17 HSPs)
chr5 (120-185)||(919684-919749)
chr5 (121-179)||(5004003-5004061)
chr5 (111-184)||(892580-892653)
chr5 (120-185)||(13789774-13789839)
chr5 (124-181)||(15969113-15969170)
chr5 (120-185)||(33478148-33478213)
chr5 (120-185)||(38394469-38394534)
chr5 (124-180)||(4409375-4409431)
chr5 (109-185)||(36409665-36409741)
chr5 (121-184)||(37322586-37322650)
chr5 (121-183)||(1899499-1899561)
chr5 (110-183)||(13391559-13391632)
chr5 (120-185)||(18473516-18473581)
chr5 (96-185)||(22398082-22398171)
chr5 (120-185)||(35922081-35922145)
chr5 (120-184)||(1950627-1950691)
chr5 (124-180)||(4409375-4409431)
[»] chr2 (24 HSPs)
chr2 (120-185)||(41153153-41153218)
chr2 (120-185)||(7943481-7943546)
chr2 (120-185)||(11030234-11030299)
chr2 (120-184)||(35728507-35728571)
chr2 (122-185)||(9152423-9152486)
chr2 (120-185)||(12962746-12962811)
chr2 (124-185)||(45651026-45651087)
chr2 (96-148)||(472426-472478)
chr2 (125-185)||(9002457-9002517)
chr2 (121-185)||(20218585-20218649)
chr2 (111-185)||(40255514-40255588)
chr2 (111-185)||(41153152-41153226)
chr2 (120-185)||(10204967-10205032)
chr2 (121-154)||(12488491-12488524)
chr2 (121-154)||(12518765-12518798)
chr2 (136-185)||(17278023-17278072)
chr2 (136-181)||(20555303-20555348)
chr2 (120-185)||(28014314-28014379)
chr2 (120-185)||(32457255-32457320)
chr2 (120-185)||(38983041-38983106)
chr2 (120-168)||(4860277-4860324)
chr2 (121-185)||(36452432-36452496)
chr2 (120-184)||(44089464-44089528)
chr2 (111-183)||(44587682-44587754)
[»] chr1 (26 HSPs)
chr1 (120-185)||(49944874-49944939)
chr1 (120-185)||(50155340-50155405)
chr1 (120-185)||(11386196-11386261)
chr1 (136-185)||(38590124-38590173)
chr1 (120-180)||(40609734-40609794)
chr1 (122-185)||(25554580-25554643)
chr1 (120-185)||(34332517-34332582)
chr1 (120-185)||(44939108-44939173)
chr1 (83-180)||(46508145-46508242)
chr1 (111-184)||(50155340-50155413)
chr1 (120-184)||(26760215-26760279)
chr1 (120-184)||(26924255-26924319)
chr1 (120-180)||(31362465-31362525)
chr1 (96-183)||(14231060-14231147)
chr1 (103-185)||(49944858-49944940)
chr1 (124-185)||(6661555-6661616)
chr1 (110-183)||(15290617-15290690)
chr1 (120-185)||(15342978-15343043)
chr1 (120-185)||(26070865-26070930)
chr1 (124-185)||(31362465-31362526)
chr1 (120-185)||(37921694-37921759)
chr1 (120-185)||(38040318-38040383)
chr1 (120-185)||(38737973-38738038)
chr1 (120-184)||(15286051-15286115)
chr1 (125-169)||(20728168-20728212)
chr1 (124-184)||(48377836-48377896)
[»] scaffold0006 (1 HSPs)
scaffold0006 (96-147)||(46795-46846)
[»] scaffold0002 (1 HSPs)
scaffold0002 (111-185)||(423289-423363)
[»] scaffold0128 (1 HSPs)
scaffold0128 (121-178)||(44096-44153)
[»] scaffold1786 (1 HSPs)
scaffold1786 (121-185)||(547-611)
[»] scaffold0236 (1 HSPs)
scaffold0236 (136-184)||(16709-16757)
[»] scaffold0123 (1 HSPs)
scaffold0123 (120-180)||(28131-28191)
[»] scaffold0070 (1 HSPs)
scaffold0070 (134-174)||(40197-40237)


Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 27789504 - 27789172
Alignment:
Q  1 accaatggtggtggtcacataacaagtctccacactatacagaccggccaaaatgacatgcatcacaattcatggctgcacactctggtcgttactataa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27789504 accaatggtggtggtcacataacaagtctccacactatacagaccggccaaaatgacatgcatcacaattcatggctgcacactctggtcgttattataa 27789405  T
Q  101 acaaaatataacttgttacattcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatcnnnnnnng-nnnnnn 199  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |           
T  27789404 acaaaaaataacttgttacattcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatcaaaaaaagttttgtt 27789305  T
Q  200 nnccttataataatgagttaatgaccgaagtgtcgaccttcctccctttgattaggaggaatccatgcaa---ttatcaatggtagtatggtactcatgc 296  Q
       |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||   | |||||||||||||||||||||||||    
T  27789304 ttgcttataataatgagttaatgaccgaagtgtcgacctccctccctttggttaggaggaatccatgcaacattcatcaatggtagtatggtactcatgc 27789205  T
Q  297 tagattaaaattatgcaacatacgatgctatat 329  Q
    |||||||||||||||||||||||||||||||||    
T  27789204 tagattaaaattatgcaacatacgatgctatat 27789172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 128 - 185
Target Start/End: Original strand, 32272670 - 32272727
Alignment:
Q  128 aataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    ||||||| ||||||||||||||||||||| || |||||||||| ||||||||||||||    
T  32272670 aataactcatgtatttggtcaatattatagacgagatacatcatttattcaatgaatc 32272727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 8793825 - 8793760
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||| |||| |||||||||| ||| |||||||| |||| |||||||||||| ||||||||||    
T  8793825 attcattgcataaatgatgtatttagtctatattatagaccaaatacatcaattactcaatgaatc 8793760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 10839869 - 10839804
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||| |||| |||||||||||||| ||||| |||||||  ||||| ||||||||||||||||    
T  10839869 attcattgcataaatgatgtatttggtctatattctataccaagtacattaattattcaatgaatc 10839804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 185
Target Start/End: Original strand, 36191790 - 36191852
Alignment:
Q  121 ttcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    ||||||| |||| |||||||||||||  ||||| ||||| |||||||||||||||||||||||||    
T  36191790 ttcattgcataaatgatgtatttggt--atattttatacaagatacatcaattattcaatgaatc 36191852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 3236436 - 3236372
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaat 184  Q
    |||||||| |||| |||||||||||||| | ||| || || ||||||||||||||||||||||||    
T  3236436 attcattgtataaatgatgtatttggtctaaattttaaactagatacatcaattattcaatgaat 3236372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 10184593 - 10184658
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||| |||| |||||||||||||| ||||| |  | || |||||||||||||||||||||||    
T  10184593 attcattgtataaatgatgtatttggtctatattctggatcatatacatcaattattcaatgaatc 10184658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 185
Target Start/End: Original strand, 6189673 - 6189737
Alignment:
Q  121 ttcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    ||||| |||||| |||||||||||||||||| |||| || | |||||||| ||||| ||||||||    
T  6189673 ttcatcgaataaatgatgtatttggtcaataatatagactaaatacatcatttattgaatgaatc 6189737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 180
Target Start/End: Complemental strand, 8818755 - 8818696
Alignment:
Q  121 ttcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaat 180  Q
    |||||| ||||| |||||||| || || |||||||| || ||||||||||||||||||||    
T  8818755 ttcatttaataattgatgtatctgatctatattataaactagatacatcaattattcaat 8818696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 10107377 - 10107317
Alignment:
Q  121 ttcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    ||||||||||||||||||||| ||||| ||||    ||||| |||||| ||||||||||||||||    
T  10107377 ttcattgaataactgatgtatctggtctatat----taccatatacattaattattcaatgaatc 10107317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 8793761 - 8793826
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    ||||||||| ||| |||||||||||||| ||| |||| || | |||||||| |||| |||||||||    
T  8793761 attcattgagtaattgatgtatttggtctataatatagactaaatacatcatttatgcaatgaatc 8793826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 13826985 - 13827037
Alignment:
Q  128 aataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaa 183  Q
    ||||||||||||||||||||||||||    |||||||||||||||| |||| ||||    
T  13826985 aataactgatgtatttggtcaatatt---gaccagatacatcaattcttcattgaa 13827037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 16448831 - 16448896
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||| |||| |||| ||||||||  ||||| ||||  |||||||||||||| ||||||||||    
T  16448831 attcattgcataaatgatatatttggtttatattctatataagatacatcaattactcaatgaatc 16448896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 24619000 - 24619065
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||| |||| |||||||||||||| ||||| |||| ||  ||||| ||||| ||||||||||    
T  24619000 attcattgcataaatgatgtatttggtctatattctataacaagtacattaattactcaatgaatc 24619065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 32549798 - 32549733
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    ||||||| |||||  ||||||| ||| | ||||||||| |||||||||||| ||||| ||||||||    
T  32549798 attcattaaataaacgatgtatctggactatattatattccagatacatcagttatttaatgaatc 32549733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 33057908 - 33057973
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    ||||||| ||||| |||||||||||| | ||||||||   ||||||||||||||||| ||| ||||    
T  33057908 attcattaaataattgatgtatttggactatattataattcagatacatcaattatttaataaatc 33057973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 42123008 - 42123073
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||| |||| |||||||||||||  ||||| || || |||||||| ||||| ||||||||||    
T  42123008 attcattgcataaatgatgtatttggtatatattctagacaagatacattaattactcaatgaatc 42123073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 5031570 - 5031506
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaat 184  Q
    |||||||| |||| |||||||||| ||| ||||| || || |||||||||||||| | |||||||    
T  5031570 attcattgcataaatgatgtatttagtctatattctagacaagatacatcaattacttaatgaat 5031506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 152
Target Start/End: Complemental strand, 9503668 - 9503612
Alignment:
Q  96 tataaacaaaatataacttgttacattcattgaataactgatgtatttggtcaatat 152  Q
    ||||||||||| ||||||| ||| ||||||||||||  | |||||||||||| ||||    
T  9503668 tataaacaaaaaataactttttagattcattgaatatttaatgtatttggtctatat 9503612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 27789321 - 27789385
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaat 184  Q
    ||||||||||||| |||||||| ||||  ||| |||  |||| |||||||| |||||||||||||    
T  27789321 attcattgaataattgatgtatctggtatataatattgaccaaatacatcagttattcaatgaat 27789385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 27976828 - 27976764
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaat 184  Q
    ||||||||||||| | |||||| ||||| | |||||| ||||||| ||| ||||||| |||||||    
T  27976828 attcattgaataattaatgtatctggtctacattatagaccagatgcattaattatttaatgaat 27976764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 28034097 - 28034033
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaat 184  Q
    ||||||||||||| | |||||| ||||| | |||||| ||||||| ||| ||||||| |||||||    
T  28034097 attcattgaataattaatgtatctggtctacattatagaccagatgcattaattatttaatgaat 28034033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 35436265 - 35436327
Alignment:
Q  121 ttcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaa 183  Q
    |||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||    
T  35436265 ttcattgaataacttatgtatctggtcaatattatatactagatacatcaattattcaatgaa 35436327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 8566123 - 8566188
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||| |||| |||||||||||||| ||||| || || |||||||||||||| ||||||||||    
T  8566123 attcattgcataaatgatgtatttggtctatattctagacaagatacatcaattactcaatgaatc 8566188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 36245418 - 36245483
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||| |||| |||||||||||||| ||||| || || |||||||||||||| ||||||||||    
T  36245418 attcattgcataaatgatgtatttggtctatattctagacaagatacatcaattactcaatgaatc 36245483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 40324750 - 40324689
Alignment:
Q  124 attgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||||||||||||| ||||| |||||||| |||||||  |||||| ||||||||||||    
T  40324750 attgaataactgatgtatctggtctatattataaaccagattaatcaataattcaatgaatc 40324689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 41850702 - 41850637
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||| |||| ||||||||||| || ||||| ||||||| |||||| ||||||||||||||||    
T  41850702 attcattgcataaatgatgtatttgctctatattttataccaaatacattaattattcaatgaatc 41850637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 183
Target Start/End: Original strand, 39153329 - 39153392
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaa 183  Q
    |||||||| |||| |||||||||| ||| |||||||| |||| |||||||||||| ||||||||    
T  39153329 attcattgcataaatgatgtatttagtctatattatagaccaaatacatcaattactcaatgaa 39153392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 5761796 - 5761861
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    ||||||| |||||||| |||||||| ||||||||||| |  | |||||||||||||||||| ||||    
T  5761796 attcattaaataactggtgtatttgatcaatattatagataaaatacatcaattattcaataaatc 5761861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 6838481 - 6838416
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||| |||| |||||||||||||| ||||| || || |||||||| ||||| ||||||||||    
T  6838481 attcattgcataaatgatgtatttggtctatattctagacaagatacattaattactcaatgaatc 6838416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 28677359 - 28677424
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||| |||| |||||||||||||| ||||| || || |||||||||||||| ||||| ||||    
T  28677359 attcattgcataaatgatgtatttggtctatattctagacaagatacatcaattactcaataaatc 28677424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 28954017 - 28954082
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    ||||||| ||||||| |||||||||| ||||||||||   ||||||||||| ||||||||| ||||    
T  28954017 attcattaaataacttatgtatttggacaatattataattcagatacatcagttattcaataaatc 28954082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 2610293 - 2610229
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaat 184  Q
    |||||||| |||| |||||||||| ||| ||||| || |||| |||||||||||| |||||||||    
T  2610293 attcattgcataaatgatgtatttagtctatattctagaccaaatacatcaattactcaatgaat 2610229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 7430150 - 7430086
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaat 184  Q
    ||||||| |||||||||||||| ||||| ||||| || |||| |||||| ||||||||| |||||    
T  7430150 attcattaaataactgatgtatctggtctatattgtaaaccaaatacataaattattcactgaat 7430086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 185
Target Start/End: Original strand, 27163204 - 27163268
Alignment:
Q  121 ttcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||||||| |||||||| ||||| |||||||| |||| |||||||| ||||| | ||||||    
T  27163204 ttcattgaataaatgatgtatgtggtctatattataaaccacatacatcatttatttagtgaatc 27163268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 32811760 - 32811816
Alignment:
Q  129 ataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||| |||||||||||||| ||||| ||||||| ||| |||||||| ||||||||||    
T  32811760 ataaatgatgtatttggtccatattctataccatataaatcaattactcaatgaatc 32811816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 40364622 - 40364682
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaat 180  Q
    |||||||||| ||||||| ||||||||  |||||||| | || ||||||||||||||||||    
T  40364622 attcattgaaaaactgatatatttggtttatattatagatcaaatacatcaattattcaat 40364682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 185
Target Start/End: Complemental strand, 43813237 - 43813162
Alignment:
Q  110 aacttgttacattcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    ||||| ||| ||||||| ||||| |||||||| |||||||||||||| || | |||| ||| ||||| ||||||||    
T  43813237 aacttcttagattcattcaataaatgatgtatgtggtcaatattatagactacatacttcatttattgaatgaatc 43813162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 181
Target Start/End: Complemental strand, 4132526 - 4132428
Alignment:
Q  83 ctctggtcgttactataaacaaaatataacttgttacattcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatg 181  Q
    |||||||| ||| |||||||||||  |||||| ||| || |||||||||  | |||||||| ||| ||| || |||| | |||||| ||||||||||||    
T  4132526 ctctggtcattattataaacaaaacttaactttttagatacattgaatatttaatgtatttagtctataataaatactatatacattaattattcaatg 4132428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 185
Target Start/End: Original strand, 29365666 - 29365728
Alignment:
Q  123 cattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    ||||| |||| ||||||||||| || ||||| ||||||| |||||| ||||| ||||||||||    
T  29365666 cattgcataaatgatgtatttgatctatattctataccaaatacattaattactcaatgaatc 29365728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 10462483 - 10462418
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||| |||| |||||||||||||  ||||| || || |||||||||||| | ||||||||||    
T  10462483 attcattgcataaatgatgtatttggtatatattttagacaagatacatcaatcactcaatgaatc 10462418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 30869244 - 30869293
Alignment:
Q  136 atgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||||||| ||||| || || |||||||||||||| ||||||||||    
T  30869244 atgtatttggtctatattctagacaagatacatcaattactcaatgaatc 30869293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 48838418 - 48838353
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||  |||| |||||||||||||| ||||| ||||||| |||||| ||||  ||||||||||    
T  48838418 attcattacataaatgatgtatttggtctatattttataccaaatacattaattgctcaatgaatc 48838353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 11668057 - 11668121
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaat 184  Q
    |||||||| |||| |||| |||||| || ||||| || || |||||||||||||| |||||||||    
T  11668057 attcattgcataaatgatatatttgatctatattctagacaagatacatcaattaatcaatgaat 11668121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 34117981 - 34118045
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaat 184  Q
    |||||||| |||| |||||||||||||| ||||| || || |||||||| |||||  ||||||||    
T  34117981 attcattgcataaatgatgtatttggtctatattctagacaagatacattaattacacaatgaat 34118045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 39153392 - 39153328
Alignment:
Q  121 ttcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||| ||| |||||||||||||| ||| |||| || | |||||||| |||| |||||||||    
T  39153392 ttcattgagtaattgatgtatttggtctataatatagactaaatacatcatttatgcaatgaatc 39153328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 121 - 185
Target Start/End: Original strand, 32711245 - 32711309
Alignment:
Q  121 ttcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||||||| |||||||||||| | |||||||| ||||||||||||||||||||||||||||    
T  32711245 ttcattgaataattgatgtatttggcctatattatagaccagatacatcaattattcaatgaatc 32711309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 183
Target Start/End: Complemental strand, 42896257 - 42896185
Alignment:
Q  111 acttgttacattcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaa 183  Q
    |||| |||| ||||||||||||||||||||| |||||  ||||||| ||||||||||||| ||||||||||||    
T  42896257 actttttacgttcattgaataactgatgtatatggtccttattatagaccagatacatcagttattcaatgaa 42896185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 2312963 - 2313023
Alignment:
Q  124 attgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaat 184  Q
    |||||||||| ||||||| ||| | |||||||||| |||||||||||||||||||||||||    
T  2312963 attgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaat 2313023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 183
Target Start/End: Complemental strand, 32711326 - 32711245
Alignment:
Q  102 caaaatataacttgttacattcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaa 183  Q
    ||||| || |||| ||| ||||||||||||| |||||||| ||||| ||| ||||  ||| |||||||||||||||||||||    
T  32711326 caaaaaatcactttttagattcattgaataattgatgtatctggtctataatataggccaaatacatcaattattcaatgaa 32711245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 48593248 - 48593187
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatg 181  Q
    ||||||||||||| | |||||||||||| ||||| || ||| ||||||||||||||||||||    
T  48593248 attcattgaataatttatgtatttggtctatattctagacccgatacatcaattattcaatg 48593187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 183
Target Start/End: Complemental strand, 2544574 - 2544501
Alignment:
Q  111 acttgttacattcattgaataactgatgtatttggtcaatattatatacca-gatacatcaattattcaatgaa 183  Q
    |||| ||| |||||||| |||| |||||||||||||| ||| | |||| || ||||||||||||||||||||||    
T  2544574 actttttagattcattgtataagtgatgtatttggtctataatttataacaagatacatcaattattcaatgaa 2544501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 19649621 - 19649686
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    ||||||||||||| |||||||||| ||| ||||| || |||  |||||||||||| ||||||||||    
T  19649621 attcattgaataattgatgtatttagtctatattttagaccgaatacatcaattactcaatgaatc 19649686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 29290884 - 29290819
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    ||||||||||||||| |||||||| ||| ||| |||| | ||||||||||| || |||||||||||    
T  29290884 attcattgaataacttatgtatttagtctataatatagatcagatacatcagttgttcaatgaatc 29290819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 184
Target Start/End: Complemental strand, 33068318 - 33068230
Alignment:
Q  96 tataaacaaaatataacttgttacattcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaat 184  Q
    ||||||||||| || | || ||||||||||||||||  | || ||||||||| |||||||| |||| |||||| |  ||||||||||||    
T  33068318 tataaacaaaaaattattttttacattcattgaatatttaatatatttggtctatattatagaccaaatacattatgtattcaatgaat 33068230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 128 - 183
Target Start/End: Complemental strand, 54273493 - 54273438
Alignment:
Q  128 aataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaa 183  Q
    ||||| ||| |||||| || |||||||||||||| |||||||| ||||||||||||    
T  54273493 aataaatgacgtatttagttaatattatataccaaatacatcatttattcaatgaa 54273438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 42896185 - 42896247
Alignment:
Q  121 ttcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaa 183  Q
    ||||||||||||||||||||| ||||| ||| ||   |||| |||||||| ||||||||||||    
T  42896185 ttcattgaataactgatgtatctggtctataataaggaccatatacatcagttattcaatgaa 42896247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 183
Target Start/End: Original strand, 42898405 - 42898439
Alignment:
Q  149 atattatataccagatacatcaattattcaatgaa 183  Q
    |||||||| ||||||||||||||||||||||||||    
T  42898405 atattatagaccagatacatcaattattcaatgaa 42898439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 9236193 - 9236128
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||  |||| |||| ||||| ||| ||||| |||| ||||||||||||||| ||||||||||    
T  9236193 attcattacataaatgatatatttagtctatattctatatcagatacatcaattactcaatgaatc 9236128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 16269859 - 16269810
Alignment:
Q  121 ttcattgaataactgatgtatttggtcaatattatataccagatacatca 170  Q
    |||||||||| ||| |||||||||||| |||||||| | |||||||||||    
T  16269859 ttcattgaattacttatgtatttggtctatattataaatcagatacatca 16269810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 19649685 - 19649620
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    ||||||||| ||| ||||||||| |||| | | |||| || | |||||||||||||||||||||||    
T  19649685 attcattgagtaattgatgtattcggtctaaaatatagactaaatacatcaattattcaatgaatc 19649620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 21662992 - 21662927
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||| |||| |||||||||||||| ||| | |||||||  ||||| ||||| ||||||||||    
T  21662992 attcattgcataaatgatgtatttggtctataatctataccaagtacattaattactcaatgaatc 21662927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 184
Target Start/End: Original strand, 29290811 - 29290884
Alignment:
Q  111 acttgttacattcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaat 184  Q
    |||| ||| |||||||||| ||||||||||| || || |||||||| || | |||||| | |||||||||||||    
T  29290811 actttttagattcattgaacaactgatgtatctgatctatattatagactaaatacataagttattcaatgaat 29290884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 30672607 - 30672550
Alignment:
Q  128 aataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||||| ||||||| | ||||||||   ||||||||||||||||| ||||||||    
T  30672607 aataactgatatatttggactatattataattcagatacatcaattatttaatgaatc 30672550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 44518142 - 44518077
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    ||||||||  ||| |||||||||||||| ||||| || || |||||||| ||||| ||||||||||    
T  44518142 attcattgtctaaatgatgtatttggtctatattttagacaagatacattaattactcaatgaatc 44518077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 9141135 - 9141179
Alignment:
Q  134 tgatgtatttggtcaatattatataccagatacatcaattattca 178  Q
    |||||||||||||| |||||||| ||||||| ||||| |||||||    
T  9141135 tgatgtatttggtctatattataaaccagattcatcagttattca 9141179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 23223009 - 23223065
Alignment:
Q  129 ataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||| |||||||||||||| ||||| || || |||||||||| ||| ||||||||||    
T  23223009 ataaatgatgtatttggtctatattttagacaagatacatcagttactcaatgaatc 23223065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 183
Target Start/End: Original strand, 28406500 - 28406572
Alignment:
Q  111 acttgttacattcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaa 183  Q
    |||| ||| |||| |||||||| | |||||||||||| ||||| || ||| | ||||| ||||||||||||||    
T  28406500 actttttagattcgttgaataattaatgtatttggtctatattctagaccgggtacataaattattcaatgaa 28406572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 43449063 - 43448999
Alignment:
Q  121 ttcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    ||||||| |||| |||||||||||||  |||| ||| || ||||| |||||||| ||||||||||    
T  43449063 ttcattgtataaatgatgtatttggtttatatcatagacaagatatatcaattactcaatgaatc 43448999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 53441949 - 53442013
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaat 184  Q
    |||||||| |||| |||||||||||||  | ||| |||||||  ||||| |||||||||||||||    
T  53441949 attcattgcataaatgatgtatttggtatacattctataccaagtacattaattattcaatgaat 53442013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 24985975 - 24986037
Alignment:
Q  121 ttcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaa 183  Q
    |||||||||||||||||||||||| || |||||||| |||| ||||||||||||| |||||||    
T  24985975 ttcattgaataactgatgtatttgatctatattatagaccatatacatcaattatccaatgaa 24986037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 7649841 - 7649905
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaat 184  Q
    ||||||||||||| |||||||||||||| | | ||||||||| ||| ||||||||||||||||||    
T  7649841 attcattgaataattgatgtatttggtctaaaatatataccaaataaatcaattattcaatgaat 7649905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 7649905 - 7649840
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    ||||||||||||| |||| ||||||||  ||||| || |||| |||||||||||||||||||||||    
T  7649905 attcattgaataattgatttatttggtatatattttagaccaaatacatcaattattcaatgaatc 7649840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 24089794 - 24089737
Alignment:
Q  126 tgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaa 183  Q
    |||||||| ||||||| |||||||||||||| |  |||||||||||||||||||||||    
T  24089794 tgaataaccgatgtatgtggtcaatattatagattagatacatcaattattcaatgaa 24089737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 184
Target Start/End: Complemental strand, 28630868 - 28630795
Alignment:
Q  111 acttgttacattcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaat 184  Q
    |||| ||| |||||||| |||| | |||||||||||| |||||||| || |||||||||||||| |||||||||    
T  28630868 actttttagattcattgcataaattatgtatttggtctatattatagacaagatacatcaattactcaatgaat 28630795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 109 - 181
Target Start/End: Original strand, 1158276 - 1158348
Alignment:
Q  109 taacttgttacattcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatg 181  Q
    |||||| ||| ||||||||||||| | ||||||| |||| ||||| || |||| |||||||||||||||||||    
T  1158276 taactttttagattcattgaataattaatgtattcggtctatattctagaccaaatacatcaattattcaatg 1158348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 185
Target Start/End: Original strand, 29168529 - 29168588
Alignment:
Q  126 tgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    ||||||| |||||||| ||||| ||||||||||||| |||||| | ||||||||||||||    
T  29168529 tgaataaatgatgtatgtggtctatattatataccacatacataatttattcaatgaatc 29168588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 179
Target Start/End: Complemental strand, 7384832 - 7384778
Alignment:
Q  125 ttgaataactgatgtatttggtcaatattatataccagatacatcaattattcaa 179  Q
    |||||||||||||||||||| |||||| |||| || |||| ||||||||||||||    
T  7384832 ttgaataactgatgtatttgatcaataatatagactagatgcatcaattattcaa 7384778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 184
Target Start/End: Complemental strand, 16121077 - 16121003
Alignment:
Q  110 aacttgttacattcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaat 184  Q
    ||||| ||| ||||||| ||||| |||||||||||||||||| |||| ||||  ||||||| ||||| |||||||    
T  16121077 aactttttagattcattaaataaatgatgtatttggtcaataatatagaccaagtacatcatttattgaatgaat 16121003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 3064989 - 3064924
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||| |||| || ||||||||||| ||||| ||||| |||||||| |||||| |||||||||    
T  3064989 attcattgcataaatggtgtatttggtctatattttatacaagatacattaattatacaatgaatc 3064924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 27909081 - 27909021
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaat 180  Q
    ||||||||||||| ||||||||||| || ||||| || ||| ||||||||||||| |||||    
T  27909081 attcattgaataattgatgtatttgatctatattttagaccggatacatcaattactcaat 27909021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 30627929 - 30627869
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaat 180  Q
    |||||||| |||| |||||||||||||| ||||| || || |||||||||||||| |||||    
T  30627929 attcattgcataaatgatgtatttggtctatattttagacaagatacatcaattactcaat 30627869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 185
Target Start/End: Complemental strand, 1158348 - 1158286
Alignment:
Q  123 cattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||||| |||||||||||||| | | |||| |||  |||||| ||||||||||||||||    
T  1158348 cattgaataattgatgtatttggtctagaatatagaccgaatacattaattattcaatgaatc 1158286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 185
Target Start/End: Complemental strand, 14173501 - 14173427
Alignment:
Q  111 acttgttacattcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||| ||| ||||||| ||||| |||||||| |||||||||||||| || | |||| ||| ||||| ||||||||    
T  14173501 acttcttagattcattcaataaatgatgtatgtggtcaatattatagactacatacttcatttattgaatgaatc 14173427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 185
Target Start/End: Complemental strand, 14178037 - 14177963
Alignment:
Q  111 acttgttacattcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||| ||| ||||||| ||||| |||||||| |||||||||||||| || | |||| ||| ||||| ||||||||    
T  14178037 acttcttagattcattcaataaatgatgtatgtggtcaatattatagactacatacttcatttattgaatgaatc 14177963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 183
Target Start/End: Complemental strand, 20703505 - 20703443
Alignment:
Q  121 ttcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaa 183  Q
    |||||||||||  | |||||||||||| |||||||| |||| |||||| || |||||||||||    
T  20703505 ttcattgaatatttaatgtatttggtctatattatagaccaaatacattaaatattcaatgaa 20703443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 8920491 - 8920556
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||||||||||||||||  | | | |||||||| | || |||||||||||||||||| ||||    
T  8920491 attcattgaataactgatgtaccttgactatattataaatcaaatacatcaattattcaataaatc 8920556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 24265513 - 24265578
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    ||||||| |||||||||||||| ||| | ||||||||   ||||||||||||||||| ||| ||||    
T  24265513 attcattaaataactgatgtatatggactatattataattcagatacatcaattatttaataaatc 24265578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 8381002 - 8381062
Alignment:
Q  124 attgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaat 184  Q
    ||||||||| | |||||||||    |||||||| | |||||||||||||||||||||||||    
T  8381002 attgaataattaatgtatttgaaatatattataaatcagatacatcaattattcaatgaat 8381062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 30732473 - 30732414
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaat 180  Q
    ||||||| |||||||||| ||||||||| ||| | || |||| ||||||||||||||||||    
T  30732473 attcattaaataactgatatatttggtctataat-tagaccaaatacatcaattattcaat 30732414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 185
Target Start/End: Complemental strand, 26066484 - 26066410
Alignment:
Q  111 acttgttacattcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||| ||| ||||||| |||||||||||||| ||||| ||||| || ||| ||||||||||||||||||||||||    
T  26066484 actttttagattcattaaataactgatgtatctggtctatattctagaccggatacatcaattattcaatgaatc 26066410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 30206526 - 30206575
Alignment:
Q  136 atgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  30206526 atgtatttggtctatattataaaccagatacatcaattattcaatgaatc 30206575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 43117900 - 43117960
Alignment:
Q  124 attgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaat 184  Q
    |||| |||| |||||||||||||| ||||| ||||||| ||||||||||||||||||||||    
T  43117900 attgcataaatgatgtatttggtctatattttataccaaatacatcaattattcaatgaat 43117960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 183
Target Start/End: Complemental strand, 32645596 - 32645533
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaa 183  Q
    ||||||||||||| ||||||||||||||||||| ||| || | |||||||| ||||||||||||    
T  32645596 attcattgaataattgatgtatttggtcaatataatagactaaatacatcagttattcaatgaa 32645533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 53225686 - 53225751
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||| |||| |||||||||||||| | ||| ||||||| |||||| ||||||||||||||||    
T  53225686 attcattgcataaatgatgtatttggtctacattctataccaaatacattaattattcaatgaatc 53225751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 121 - 185
Target Start/End: Original strand, 32645533 - 32645597
Alignment:
Q  121 ttcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    ||||||||||||||||||||||| ||| ||  |||  |||| |||||||||||||||||||||||    
T  32645533 ttcattgaataactgatgtatttagtctattatattgaccaaatacatcaattattcaatgaatc 32645597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 170
Target Start/End: Original strand, 2401042 - 2401128
Alignment:
Q  84 tctggtcgttactataaacaaaatataacttgttacattcattgaataactgatgtatttggtcaatattatataccagatacatca 170  Q
    ||||||| ||| ||||| |||||  |||||| ||| ||||||| ||||| |||||||||||||||||| |||| || | ||||||||    
T  2401042 tctggtcattattataagcaaaagttaactttttaaattcattcaataaatgatgtatttggtcaataatatagactaaatacatca 2401128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 30192002 - 30191937
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||| |||| |||||||||||||| ||||| || || | |||||||||||| ||||||||||    
T  30192002 attcattgcataaatgatgtatttggtctatattctagacaaaatacatcaattactcaatgaatc 30191937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 184
Target Start/End: Complemental strand, 36491136 - 36491063
Alignment:
Q  111 acttgttacattcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaat 184  Q
    |||| ||| ||||| |||||||||||||||| | ||| ||| |||| || ||||||||||| ||||||||||||    
T  36491136 actttttaaattcagtgaataactgatgtatctagtcgataatataaactagatacatcaaatattcaatgaat 36491063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 48361158 - 48361093
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||| |||| |||||||||||||| ||||| || || | |||||||||||| ||||||||||    
T  48361158 attcattgcataaatgatgtatttggtctatattctagacaaaatacatcaattactcaatgaatc 48361093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 184
Target Start/End: Complemental strand, 48195995 - 48195932
Alignment:
Q  121 ttcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaat 184  Q
    ||||||| |||| |||||||||||||| ||||| || || |||||| ||||||| |||||||||    
T  48195995 ttcattgcataaatgatgtatttggtctatattctagacaagatacgtcaattactcaatgaat 48195932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 183
Target Start/End: Complemental strand, 3345422 - 3345360
Alignment:
Q  121 ttcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaa 183  Q
    |||||||||||| |||||||| || ||  ||||| | |||| |||||||||||||||||||||    
T  3345422 ttcattgaataattgatgtatctgatccgtattacaaaccatatacatcaattattcaatgaa 3345360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 185
Target Start/End: Complemental strand, 16412337 - 16412275
Alignment:
Q  123 cattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    ||||| |||| | |||||||||||| ||||| || |||| ||| |||||||||||||||||||    
T  16412337 cattgcataaataatgtatttggtctatattctagaccaaatatatcaattattcaatgaatc 16412275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 181
Target Start/End: Complemental strand, 20114174 - 20114104
Alignment:
Q  111 acttgttacattcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatg 181  Q
    |||| ||| ||| ||||||||||| |||||| ||||| ||||| || |||| |||||| ||||||||||||    
T  20114174 actttttagattaattgaataactaatgtatatggtctatattctaaaccaaatacataaattattcaatg 20114104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 183
Target Start/End: Complemental strand, 26166003 - 26165941
Alignment:
Q  121 ttcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaa 183  Q
    |||||||||||||| |||||||||||| ||| |||| || | |||||| | ||||||||||||    
T  26166003 ttcattgaataactaatgtatttggtctataatataaacaatatacataagttattcaatgaa 26165941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 185
Target Start/End: Complemental strand, 39897220 - 39897146
Alignment:
Q  111 acttgttacattcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||| ||| |||||||| ||| || |||||| || |||||||| || ||||||||||||  ||||||||||||||    
T  39897220 actttttagattcattgcatatctcatgtatctgatcaatattttagaccagatacatcggttattcaatgaatc 39897146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 21554151 - 21554215
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||| |||| |||||||||||||| ||||| |||| || |||||| ||||| ||||||||||    
T  21554151 attcattgcataaatgatgtatttggtctatattctatatca-atacattaattactcaatgaatc 21554215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 26066411 - 26066476
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    ||||||||||||| ||||||||  |||| | | |||| ||||||||||||| ||||| ||||||||    
T  26066411 attcattgaataattgatgtatccggtctagaatatagaccagatacatcagttatttaatgaatc 26066476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 185
Target Start/End: Complemental strand, 43117964 - 43117895
Alignment:
Q  116 ttacattcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    ||||||||||||||||| |||||||||||||  | | |||| |||| |||||||| |||| |||| ||||    
T  43117964 ttacattcattgaataattgatgtatttggtataaaatatagaccaaatacatcatttatgcaataaatc 43117895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 13412763 - 13412699
Alignment:
Q  121 ttcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||| |||||||||||||| ||| ||||||||||   ||||| ||||| ||||| ||||||||    
T  13412763 ttcattaaataactgatgtatctgggcaatattataattcagatgcatcagttatttaatgaatc 13412699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 17284777 - 17284837
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaat 180  Q
    |||||||| |||| |||||||| ||||| ||||| || || ||||||||||||||| ||||    
T  17284777 attcattgcataaatgatgtatgtggtctatattctagacaagatacatcaattatacaat 17284837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 185
Target Start/End: Original strand, 22235303 - 22235363
Alignment:
Q  125 ttgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||| |||| |||||| ||  || |||| ||||||||||||| ||||||||||||||    
T  22235303 ttgaataattgatatatttgatctttaatataaaccagatacatcagttattcaatgaatc 22235363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 25477587 - 25477651
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaat 184  Q
    |||||||| |||| ||||||||||| || ||||| || || | |||||||||||| |||||||||    
T  25477587 attcattgcataaatgatgtatttgatctatattctacacaaaatacatcaattactcaatgaat 25477651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 44111796 - 44111852
Alignment:
Q  129 ataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||| |||||||||||||| ||||| || |  |||||||||||||| ||||||||||    
T  44111796 ataaatgatgtatttggtctatattctaaagaagatacatcaattactcaatgaatc 44111852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 45828466 - 45828522
Alignment:
Q  129 ataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||| |||||||||||||  |||||||| |||| |||||| ||||| ||||||||||    
T  45828466 ataaatgatgtatttggtttatattatagaccaaatacattaattactcaatgaatc 45828522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 46462481 - 46462417
Alignment:
Q  121 ttcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||||||| |||||||| | |||  ||||||| |||| |||||||| ||||| ||||||||    
T  46462481 ttcattgaataaatgatgtatgtagtctttattataaaccatatacatcatttatttaatgaatc 46462417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 52760344 - 52760280
Alignment:
Q  121 ttcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||| ||||||| |||||||| ||||||||||||||| | ||||||   ||||||||| ||||    
T  52760344 ttcattaaataacttatgtatttagtcaatattatatactaaatacatgtgttattcaataaatc 52760280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 52768754 - 52768813
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaat 180  Q
    ||||||||||||| | |||||||||||  ||| || |||||||||| ||||||||||||||    
T  52768754 attcattgaataattaatgtatttggtttataatacataccagata-atcaattattcaat 52768813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 919684 - 919749
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    ||||||| ||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||    
T  919684 attcattcaataaatgatgtatttggtctatattctatactagatacatcaattactcaatgaatc 919749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 179
Target Start/End: Original strand, 5004003 - 5004061
Alignment:
Q  121 ttcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaa 179  Q
    ||||||||||||||||||||||| ||| |||||||| |  |||||||| ||||||||||    
T  5004003 ttcattgaataactgatgtatttagtctatattataaattagatacattaattattcaa 5004061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 184
Target Start/End: Original strand, 892580 - 892653
Alignment:
Q  111 acttgttacattcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaat 184  Q
    |||| ||| ||||||||||||| | ||||||||| || ||| ||||||| |||||||||  |||||||||||||    
T  892580 actttttagattcattgaataattaatgtatttgttctatactatatactagatacatccgttattcaatgaat 892653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 13789774 - 13789839
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||| |||| |||||||||||||| | ||| |||||||  ||||| ||||||||||||||||    
T  13789774 attcattgcataaatgatgtatttggtctacattctataccaagtacattaattattcaatgaatc 13789839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 181
Target Start/End: Complemental strand, 15969170 - 15969113
Alignment:
Q  124 attgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatg 181  Q
    |||||||||||||||||| ||||| |||||||| | |||||| ||||| |||||||||    
T  15969170 attgaataactgatgtatatggtctatattatagatcagatatatcaagtattcaatg 15969113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 33478213 - 33478148
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||| |||| |||||||||||| | ||||| || || |||||||||||||| ||||||||||    
T  33478213 attcattgcataaatgatgtatttggcctatattctagacgagatacatcaattactcaatgaatc 33478148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 38394534 - 38394469
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||| |||| |||||||||||||| | ||| |||||||  ||||| ||||||||||||||||    
T  38394534 attcattgcataaatgatgtatttggtctacattctataccaagtacattaattattcaatgaatc 38394469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 180
Target Start/End: Original strand, 4409375 - 4409431
Alignment:
Q  124 attgaataactgatgtatttggtcaatattatataccagatacatcaattattcaat 180  Q
    ||||||| | |||||||||| ||| |||||||| |||| ||||||||||||||||||    
T  4409375 attgaattattgatgtatttagtctatattatagaccaaatacatcaattattcaat 4409431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 185
Target Start/End: Original strand, 36409665 - 36409741
Alignment:
Q  109 taacttgttacattcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||| ||| ||| ||||||||| |||| ||| ||||| |||| ||||| || |||||||| ||||||||||||||    
T  36409665 taactttttagatttattgaataaatgatatatgtggtctatatcatatatcacatacatcatttattcaatgaatc 36409741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 184
Target Start/End: Original strand, 37322586 - 37322650
Alignment:
Q  121 ttcattgaataactgat-gtatttggtcaatattatataccagatacatcaattattcaatgaat 184  Q
    ||||||| ||||||||| |||| | ||| ||||| || |||||||||||||||||||||||||||    
T  37322586 ttcattggataactgattgtatctagtctatattttagaccagatacatcaattattcaatgaat 37322650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 1899499 - 1899561
Alignment:
Q  121 ttcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaa 183  Q
    ||||||||||||||  ||||| |||||||||||| | | || |||||||| ||||||||||||    
T  1899499 ttcattgaataacttgtgtatctggtcaatattacagagcacatacatcagttattcaatgaa 1899561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 13391559 - 13391632
Alignment:
Q  110 aacttgttacattcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaa 183  Q
    ||||| ||| ||||||| ||||| |||||||||||||||||| |||| || | |||||| | ||||| ||||||    
T  13391559 aactttttagattcattcaataaatgatgtatttggtcaataatatagactaaatacataatttattgaatgaa 13391632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 18473581 - 18473516
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||| |||| ||||| ||||| || ||||| || || |||||||||||||| ||||||||||    
T  18473581 attcattgtataaatgatgcatttgatctatattctagacaagatacatcaattactcaatgaatc 18473516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 185
Target Start/End: Complemental strand, 22398171 - 22398082
Alignment:
Q  96 tataaacaaaatataacttgttacattcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||| |||||| ||||| ||| ||||||||||||| | |||||||||||||   ||||| || | |||||  ||||||||||| ||||    
T  22398171 tataaataaaatacaactttttagattcattgaataattaatgtatttggtcatatttatagactatatacaataattattcaataaatc 22398082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 35922145 - 35922081
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    ||||||| ||||| |||||||||||||| ||||| |||||| |||| || ||||||| ||||||||    
T  35922145 attcattaaataattgatgtatttggtctatattctatacc-gatatataaattatttaatgaatc 35922081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 1950627 - 1950691
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaat 184  Q
    ||||||| |||||||||||||||||| | ||||||||    |||||||||| ||||| |||||||    
T  1950627 attcattaaataactgatgtatttggactatattataatagagatacatcagttatttaatgaat 1950691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 4409431 - 4409375
Alignment:
Q  124 attgaataactgatgtatttggtcaatattatataccagatacatcaattattcaat 180  Q
    ||||||||| |||||||||||||| ||| |||| || | |||||||||| |||||||    
T  4409431 attgaataattgatgtatttggtctataatatagactaaatacatcaataattcaat 4409375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 41153153 - 41153218
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||| |||| |||||||||||||| |||||||| |||| |||||||||||| ||||||||||    
T  41153153 attcattgcataaatgatgtatttggtctatattataaaccaaatacatcaattactcaatgaatc 41153218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 7943481 - 7943546
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||| |||| |||| ||||||||| ||||| || || |||||||||||||||||||||||||    
T  7943481 attcattgcataaatgatatatttggtctatattgtagacaagatacatcaattattcaatgaatc 7943546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 11030234 - 11030299
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||  |||| |||||||||||||| ||||| |||| ||||||||||||||| ||||||||||    
T  11030234 attcattacataaatgatgtatttggtctatattctatatcagatacatcaattactcaatgaatc 11030299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 35728507 - 35728571
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaat 184  Q
    |||||||| |||| |||| ||||||||| ||||| || || ||||||||||||||||||||||||    
T  35728507 attcattgcataaatgatatatttggtctatattctaaacaagatacatcaattattcaatgaat 35728571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 9152423 - 9152486
Alignment:
Q  122 tcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    ||||| ||||| |||||||||||||| ||||| || || |||||||||||||| ||||||||||    
T  9152423 tcattaaataattgatgtatttggtctatattttagactagatacatcaattactcaatgaatc 9152486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 12962811 - 12962746
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||| |||| |||||||||||||| ||||| |||||||  ||||| ||||| ||||||||||    
T  12962811 attcattgcataaatgatgtatttggtctatattttataccaagtacattaattactcaatgaatc 12962746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 45651026 - 45651087
Alignment:
Q  124 attgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    ||||||||||||||| || || || ||| |||| |||||||||||||||||||||| |||||    
T  45651026 attgaataactgatgaatctgttctataatatagaccagatacatcaattattcaaagaatc 45651087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 472426 - 472478
Alignment:
Q  96 tataaacaaaatataacttgttacattcattgaataactgatgtatttggtca 148  Q
    ||||||||||||||||||| |||  || ||||||||||| |||||||||||||    
T  472426 tataaacaaaatataactttttaggtttattgaataactaatgtatttggtca 472478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 185
Target Start/End: Complemental strand, 9002517 - 9002457
Alignment:
Q  125 ttgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||| |||| ||||||||| |||||||||| || |||||| | ||||||||||||||    
T  9002517 ttgaataattgatatatttggtctatattatatatcaaatacataagttattcaatgaatc 9002457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 185
Target Start/End: Original strand, 20218585 - 20218649
Alignment:
Q  121 ttcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    ||||||||||||| |||||||   |||| ||||||| ||  ||||||||||||||||||||||||    
T  20218585 ttcattgaataaccgatgtatgcagtcagtattatagactggatacatcaattattcaatgaatc 20218649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 185
Target Start/End: Complemental strand, 40255588 - 40255514
Alignment:
Q  111 acttgttacattcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||| ||| |||||||||||||||||  |||||| |||||| |||| || | ||| || ||||||||||||||||    
T  40255588 actttttagattcattgaataactgaactatttgatcaataatataaactaaatatataaattattcaatgaatc 40255514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 185
Target Start/End: Complemental strand, 41153226 - 41153152
Alignment:
Q  111 acttgttacattcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||| ||| ||||||||| ||| |||||||||||||  ||| |||| |||| |||||||| |||| |||||||||    
T  41153226 actttttagattcattgagtaattgatgtatttggtttataatatagaccaaatacatcatttatgcaatgaatc 41153152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 10205032 - 10204967
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||| |||| |||||||||| ||| ||||| || || |||||||||||||  ||||||||||    
T  10205032 attcattgtataaatgatgtatttagtctatattttagacaagatacatcaattgctcaatgaatc 10204967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 154
Target Start/End: Complemental strand, 12488524 - 12488491
Alignment:
Q  121 ttcattgaataactgatgtatttggtcaatatta 154  Q
    ||||||||||||||||||||||||||| ||||||    
T  12488524 ttcattgaataactgatgtatttggtctatatta 12488491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 154
Target Start/End: Complemental strand, 12518798 - 12518765
Alignment:
Q  121 ttcattgaataactgatgtatttggtcaatatta 154  Q
    ||||||||||||||||||||||||||| ||||||    
T  12518798 ttcattgaataactgatgtatttggtctatatta 12518765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 185
Target Start/End: Complemental strand, 17278072 - 17278023
Alignment:
Q  136 atgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||| |||||||| ||||| ||||||| |||| |||||||||||||||    
T  17278072 atgtatatggtcaatgttataaaccagattcatctattattcaatgaatc 17278023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 20555348 - 20555303
Alignment:
Q  136 atgtatttggtcaatattatataccagatacatcaattattcaatg 181  Q
    |||||||||||| ||||| || || |||||||||||||||||||||    
T  20555348 atgtatttggtctatattctagacaagatacatcaattattcaatg 20555303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 28014379 - 28014314
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||| |||| |||||||||||||| ||| |||| || |||||||  |||||| |||||||||    
T  28014379 attcattgcataaatgatgtatttggtctatactatagacaagatacaataattatacaatgaatc 28014314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 32457255 - 32457320
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||| |||| |||||||||| ||| ||||| || || |||||||||||||| | ||||||||    
T  32457255 attcattgcataaatgatgtatttagtctatattctagacaagatacatcaattacttaatgaatc 32457320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 38983041 - 38983106
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||| |||| |||||||||| ||| ||||| || || ||||||||||||||  |||||||||    
T  38983041 attcattgcataaatgatgtattttgtctatattctagacaagatacatcaattacacaatgaatc 38983106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 4860277 - 4860324
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacat 168  Q
    |||||||||||||||||||||| ||||| ||| |||| |||||||||||    
T  4860277 attcattgaataactgatgtatctggtctata-tataaaccagatacat 4860324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 185
Target Start/End: Original strand, 36452432 - 36452496
Alignment:
Q  121 ttcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||| ||||| | |||||| |||| || | |||| | ||||||||||||||||||||||||||    
T  36452432 ttcattaaataagtaatgtatctggttaacaatatagatcagatacatcaattattcaatgaatc 36452496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 44089528 - 44089464
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaat 184  Q
    ||||||| ||||  |||||||| ||||| |||||||| ||||  ||||||| |||||||||||||    
T  44089528 attcattcaatacatgatgtatgtggtctatattatagaccatgtacatcatttattcaatgaat 44089464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 183
Target Start/End: Complemental strand, 44587754 - 44587682
Alignment:
Q  111 acttgttacattcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaa 183  Q
    |||| ||| ||||||||||| | |||||||| ||||||  | |||| |||| |||||||| ||||||||||||    
T  44587754 actttttagattcattgaatgagtgatgtatgtggtcatcaatatagaccacatacatcatttattcaatgaa 44587682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 49944939 - 49944874
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||| |||| |||||||||||||| ||||| || || |||||||||||||||||||||||||    
T  49944939 attcattgtataaatgatgtatttggtctatattctagacaagatacatcaattattcaatgaatc 49944874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 50155340 - 50155405
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||| |||| |||||||||||||| |||||||| |||| |||||||||||| ||||||||||    
T  50155340 attcattgcataaatgatgtatttggtctatattatagaccaaatacatcaattactcaatgaatc 50155405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 11386261 - 11386196
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||| |||| |||||||||| ||| ||||| || |||||| |||||||||||||||||||||    
T  11386261 attcattgcataaatgatgtatttcgtctatattctagaccagaaacatcaattattcaatgaatc 11386196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 38590124 - 38590173
Alignment:
Q  136 atgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||||||| ||||| |||||||||||||||||||| ||||||||||    
T  38590124 atgtatttggtctatattctataccagatacatcaattactcaatgaatc 38590173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 40609734 - 40609794
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaat 180  Q
    |||||||||||||||||||||||| | |||||||||||  |||| |||| |||||||||||    
T  40609734 attcattgaataactgatgtattttgacaatattatatgtcagacacattaattattcaat 40609794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 25554643 - 25554580
Alignment:
Q  122 tcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    ||||| |||||||||||||||||| | ||| |||||| || |||||||| ||||||||||||||    
T  25554643 tcattaaataactgatgtatttggcctatagtatatatcacatacatcatttattcaatgaatc 25554580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 34332582 - 34332517
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||| |||| |||||||||||||| ||||| || || | |||||||||||| ||||||||||    
T  34332582 attcattggataaatgatgtatttggtctatattctagacaaaatacatcaattactcaatgaatc 34332517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 44939108 - 44939173
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||| |||| |||||||||||||| ||||| || |  |||||||||||||| ||||||||||    
T  44939108 attcattgtataaatgatgtatttggtctatattctagattagatacatcaattactcaatgaatc 44939173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 180
Target Start/End: Original strand, 46508145 - 46508242
Alignment:
Q  83 ctctggtcgttactataaacaaaatataacttgttacattcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaat 180  Q
    |||| ||| ||| ||||| ||||| | ||||| | | ||||||||||||||| |||||| ||||||||| || | || |||| |||||||||||||||    
T  46508145 ctctagtccttattataagcaaaaaaaaacttttcagattcattgaataacttatgtatctggtcaataataaagacaagatgcatcaattattcaat 46508242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 184
Target Start/End: Complemental strand, 50155413 - 50155340
Alignment:
Q  111 acttgttacattcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaat 184  Q
    |||| ||| ||||||||| ||| |||||||||||||| ||| |||| |||| |||||||| |||| ||||||||    
T  50155413 actttttagattcattgagtaattgatgtatttggtctataatatagaccaaatacatcatttatgcaatgaat 50155340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 26760215 - 26760279
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaat 184  Q
    ||||||||||||| |||||||||||||| ||||| |||||||  ||||| ||| | |||||||||    
T  26760215 attcattgaataaatgatgtatttggtctatattctataccaagtacattaatgactcaatgaat 26760279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 26924319 - 26924255
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaat 184  Q
    ||||||||||||| |||||||||||||| ||||| |||||||  ||||| ||| | |||||||||    
T  26924319 attcattgaataaatgatgtatttggtctatattctataccaagtacattaatgactcaatgaat 26924255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 31362525 - 31362465
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaat 180  Q
    ||||||||||||| |||||||| ||||| |||||||| || |||||||||| ||| |||||    
T  31362525 attcattgaataattgatgtatatggtccatattatagacaagatacatcagttaatcaat 31362465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 96 - 183
Target Start/End: Original strand, 14231060 - 14231147
Alignment:
Q  96 tataaacaaaatataacttgttacattcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaa 183  Q
    ||||| ||||| ||||||| |||| |||||||||| | | ||||||||  |||  |||||| ||||||||||| | ||||||||||||    
T  14231060 tataagcaaaaaataactttttacgttcattgaatgattaatgtatttaatcacaattatagaccagatacattagttattcaatgaa 14231147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 185
Target Start/End: Original strand, 49944858 - 49944940
Alignment:
Q  103 aaaatataacttgttacattcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    ||||| |||||| ||| ||||||||||||| |||||||| | ||| | | |||| |||| |||||||| |||| |||||||||    
T  49944858 aaaatttaactttttagattcattgaataattgatgtatcttgtctagaatatagaccaaatacatcatttatacaatgaatc 49944940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 6661616 - 6661555
Alignment:
Q  124 attgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||| |||| |||||||||||||| ||||| ||||| |||||||| ||||| | ||||||||    
T  6661616 attgcataaatgatgtatttggtctatattctatacaagatacattaattactaaatgaatc 6661555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 15290690 - 15290617
Alignment:
Q  110 aacttgttacattcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaa 183  Q
    ||||| ||| ||||||| ||||| |||||||||||||||||| |||| || | |||||||| ||| | ||||||    
T  15290690 aactttttagattcatttaataaatgatgtatttggtcaataatatagactaaatacatcatttaatgaatgaa 15290617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 15343043 - 15342978
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||| |||| |||||||||||||| ||||| || || |||||||| |||||  |||||||||    
T  15343043 attcattgcataaatgatgtatttggtctatattctagacaagatacattaattacacaatgaatc 15342978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 26070930 - 26070865
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||| |||| | |||||||||||| ||||| || |  |||||||||||||| ||||||||||    
T  26070930 attcattgcataaataatgtatttggtctatattctagataagatacatcaattactcaatgaatc 26070865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 31362465 - 31362526
Alignment:
Q  124 attgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    ||||| |||||||||||| | ||| ||| |||  |||| |||||||||||||||||||||||    
T  31362465 attgattaactgatgtatcttgtctataatatggaccatatacatcaattattcaatgaatc 31362526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 37921759 - 37921694
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    ||||||| ||||||| |||||||||| | |||||||| || | |||||||||||||| ||| ||||    
T  37921759 attcattaaataacttatgtatttggactatattataaactaaatacatcaattatttaataaatc 37921694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 38040318 - 38040383
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||| |||| |||| |||||| || ||||| || || |||||||||||||| ||||||||||    
T  38040318 attcattgcataaatgatatatttgatctatattctagacaagatacatcaattaatcaatgaatc 38040383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 38737973 - 38738038
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||||| ||||  ||||||||||||  ||||| || || |||||||||||||| ||||||||||    
T  38737973 attcattgcataaaggatgtatttggtttatattctagacaagatacatcaattactcaatgaatc 38738038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 15286051 - 15286115
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaat 184  Q
    |||||||  |||| ||||||||||| || ||||| |||||||  ||||| |||||||||||||||    
T  15286051 attcattatataaatgatgtatttgatctatattctataccaagtacattaattattcaatgaat 15286115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 20728212 - 20728168
Alignment:
Q  125 ttgaataactgatgtatttggtcaatattatataccagatacatc 169  Q
    ||||||||||||||||| | ||| |||||||| ||||||||||||    
T  20728212 ttgaataactgatgtatctagtctatattataaaccagatacatc 20728168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 48377836 - 48377896
Alignment:
Q  124 attgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaat 184  Q
    ||||||||| |||||||||| ||| |||||||| | || |||| ||| |||||||||||||    
T  48377836 attgaataattgatgtatttagtctatattataaatcaaatacgtcacttattcaatgaat 48377896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 96 - 147
Target Start/End: Complemental strand, 46846 - 46795
Alignment:
Q  96 tataaacaaaatataacttgttacattcattgaataactgatgtatttggtc 147  Q
    ||||||||||| ||||||| ||| ||| |||||||||||||||||| |||||    
T  46846 tataaacaaaaaataactttttagattgattgaataactgatgtatctggtc 46795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 185
Target Start/End: Complemental strand, 423363 - 423289
Alignment:
Q  111 acttgttacattcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||| ||| ||||||||||||| ||||||||| |||| ||||| ||  ||| || ||||||||||||||| ||||    
T  423363 actttttagattcattgaataattgatgtattcggtctatattctaatccatatgcatcaattattcaataaatc 423289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 178
Target Start/End: Complemental strand, 44153 - 44096
Alignment:
Q  121 ttcattgaataactgatgtatttggtcaatattatataccagatacatcaattattca 178  Q
    ||||||||||||||||| | ||||||| ||| |||  | |||||||||||||||||||    
T  44153 ttcattgaataactgatttgtttggtctatactatcaatcagatacatcaattattca 44096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1786 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1786
Description:

Target: scaffold1786; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 611 - 547
Alignment:
Q  121 ttcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 185  Q
    |||||| ||| | |||||||| || ||||||||||| |||| |||||||||| ||| ||||||||    
T  611 ttcattcaattaatgatgtatgtgatcaatattataaaccacatacatcaataattaaatgaatc 547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 16709 - 16757
Alignment:
Q  136 atgtatttggtcaatattatataccagatacatcaattattcaatgaat 184  Q
    |||||||||||| ||||| || || |||||||||||||| |||||||||    
T  16709 atgtatttggtctatattctagacaagatacatcaattactcaatgaat 16757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 28131 - 28191
Alignment:
Q  120 attcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaat 180  Q
    |||||||| |||| ||||||||||| || ||||| || || ||||| ||||||||||||||    
T  28131 attcattgcataaatgatgtatttgatctatattttagacaagatatatcaattattcaat 28191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 40237 - 40197
Alignment:
Q  134 tgatgtatttggtcaatattatataccagatacatcaatta 174  Q
    |||||||||||||| ||||| |||| |||||||||||||||    
T  40237 tgatgtatttggtctatattttatatcagatacatcaatta 40197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University