View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7504_high_35 (Length: 334)
Name: NF7504_high_35
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7504_high_35 |
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Alignment Details
Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 227 - 318
Target Start/End: Complemental strand, 32496852 - 32496761
Alignment:
| Q |
227 |
acttgatattgtttttacagaaatttaagcggttggggttggttaagaatcggttaattacccgttgtacttctgggtctgatgaatttggt |
318 |
Q |
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| T |
32496852 |
acttgatattgtttttacagaaatttaagcggttggggttggttaagaatcggttaattacccgttgtacttctgggtctgatgaatttggt |
32496761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 32497071 - 32496981
Alignment:
| Q |
9 |
acatcatcatcttctacttctctccgtaacaacaacgttgttgcgtgacgaacaacaatgaactccactactttctccaactgcagagcca |
99 |
Q |
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| T |
32497071 |
acatcatcatcttctacttctctccgtaacaacaacgttgttgcgtgtcgaacaacaatgaactccactactttctccaactgcagagcca |
32496981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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