View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7504_high_40 (Length: 310)

Name: NF7504_high_40
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7504_high_40
NF7504_high_40
[»] chr3 (1 HSPs)
chr3 (1-291)||(40016722-40017012)


Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 40016722 - 40017012
Alignment:
Q  1 aaacgattactcacgtgaattgctcacttatcacgtgtcttgaacagtgttagtttttgtgtgtgttacttgtactactttctcacacactataaactca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  40016722 aaacgattactcacgtgaattgctcacttatcacgtgtcttgaacagtgttagtttttgtgtgtgttacttgtactactttctcacacactataaaccca 40016821  T
Q  101 tctcaattgttagaatctcccaaatccttaacattttttcaacaccaacaatggcgaaaaacgttgcgattttcggtttattgttttctcttcttgcgtt 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  40016822 tctcaattgttagaatctcccaaatccttaacattctttcaacaccaacaatggcgaaaaacgtttcgatttttggtttattgttttctcttcttgcgtt 40016921  T
Q  201 ggttccttctcagatcttcgctgaggaatcatcaactgacgctaaggaatttgttcttacattggataacactaatttccatgatactgtt 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40016922 ggttccttctcagatcttcgctgaggaatcatcaactgacgctaaggaatttgttcttacattggataacactaatttccatgatactgtt 40017012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University