View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7504_high_41 (Length: 306)
Name: NF7504_high_41
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7504_high_41 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 11 - 289
Target Start/End: Original strand, 15131172 - 15131449
Alignment:
| Q |
11 |
agaatatgaaggggaagatataggggtttataataagatgttgggggagaagttgacgccgcaaaagtggtaaaaggtgagagaagcttgcatgcacatg |
110 |
Q |
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| T |
15131172 |
agaaaatgaaggggaagatataggggtttataataagatgttgggggagaagttgacgccgcaaaagtggtaaaaggtgagagaagcttgcatgcacatg |
15131271 |
T |
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| Q |
111 |
aggaagagtatagtggaattaatttagnnnnnnnctattatttgaccctaataaaagttaaaaagcataagctacttacaatagaagaatgcataaaaat |
210 |
Q |
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| T |
15131272 |
aggaagagtatagtggaattaatttagtttttt-ctattatttgaccctaataaaagttaaaaagcataagctacttacaatagaagaatgcataaaaat |
15131370 |
T |
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| Q |
211 |
ccatttttggtgtgcatgcgatttttggtgtctacgtggcaattccatttgaagaattggccaagtatatggtttgtgt |
289 |
Q |
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| T |
15131371 |
ccatttttggtgtgcatgcgatttttggtgtctacgtggcaattccatttgaagaattggccaagtatatggcttgtgt |
15131449 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 21154460 - 21154533
Alignment:
| Q |
23 |
ggaagatataggggtttataa--taagatgttgggggagaa--gttgacgccgcaaaagtggtaaaaggtgaga |
92 |
Q |
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| T |
21154460 |
ggaagatataggggtttatatagtaatgtgttgggggagaatagttgacgctgcaaaagtggcaaaaggtgaga |
21154533 |
T |
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