View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7504_high_45 (Length: 296)
Name: NF7504_high_45
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7504_high_45 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-144; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 19 - 280
Target Start/End: Complemental strand, 4142249 - 4141988
Alignment:
| Q |
19 |
tagatccagaggtttgggatgcatcttttgagagtagcatgttgaggtgcatacacataggacttctttgtgtgcaagaacttccaaaagaaagaccaag |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4142249 |
tagatccagaggtttgggatgcatcttttgagagtagcatgttaaggtgcatacacataggacttctttgtgtgcaagaacttccaaaagaaagaccaag |
4142150 |
T |
|
| Q |
119 |
tatatcaaccgtagttttgatgcttataagtgagatcacacatcttccacctcctggtaaagttgcatttgttcacaagcaaaattctcgaagtacagaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4142149 |
tatatcaaccgtagttttgatgcttataagtgagatcacacatcttccacctcctggtaaagttgcatttgttcacaagcaaaattctcgaagtacagaa |
4142050 |
T |
|
| Q |
219 |
tcttctcaacaaagtcatcgatctaactcaaacaacaatgtaaccatgagcgatgtcacagg |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4142049 |
tcttctcaacaaagtcatcgatctaactcaaacaacaatgtaaccatgagcgatgtcacagg |
4141988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 276
Target Start/End: Complemental strand, 4129897 - 4129640
Alignment:
| Q |
19 |
tagatccagaggtttgggatgcatcttttgagagtagcatgttgaggtgcatacacataggacttctttgtgtgcaagaacttccaaaagaaagaccaag |
118 |
Q |
| |
|
|||||| |||||| ||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4129897 |
tagatcgagaggtatgggatgcatcctttgaaagcagcatgttgaggtgcatgcacataggacttctttgtgtgcaagaacttccaaaagaaagaccaag |
4129798 |
T |
|
| Q |
119 |
tatatcaaccgtagttttgatgcttataagtgagatcacacatcttccacctcctggtaaagttgcatttgttcacaagcaaaattctcgaagtacagaa |
218 |
Q |
| |
|
||||||||| || ||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4129797 |
tatatcaactgttgttttgatgctcataagtgagattacacatcttccacctcccggtaaagttgcatttgttcacaaccaaaattctcgaagtacagaa |
4129698 |
T |
|
| Q |
219 |
tcttctcaacaaagtcatcgatctaactcaaacaacaatgtaaccatgagcgatgtca |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
4129697 |
tcttctcaacaaagtcatcgatctaactcaaacaacaatgtaactttgagtgatgtca |
4129640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 19 - 280
Target Start/End: Complemental strand, 4119865 - 4119601
Alignment:
| Q |
19 |
tagatccagaggtttgggatgcatcttttgagagtagcatgttgaggtgcatacacataggacttctttgtgtgcaagaacttccaaaagaaagaccaag |
118 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4119865 |
tagatccagaggtatgggatgcatgttttgagagcagcatgttaaggtgcatacacataggacttctttgtgtgcaagaacttccaaaagaaagaccaag |
4119766 |
T |
|
| Q |
119 |
tatatcaaccgtagttttgatgcttataagtgagatcacacatcttccacctcctggtaaagttgcatttgttcacaagcaaaattc---tcgaagtaca |
215 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||| | |||||||||||||| |||||||||||||||||||||||||||||||| | | |||| |
|
|
| T |
4119765 |
tatatcaaccgtagttttgatgctcataaatgagataaggcatcttccacctccaggtaaagttgcatttgttcacaagcaaaattcaaagagtactaca |
4119666 |
T |
|
| Q |
216 |
gaatcttctcaacaaagtcatcgatctaactcaaacaacaatgtaaccatgagcgatgtcacagg |
280 |
Q |
| |
|
|||||||||||| | || |||| |||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
4119665 |
gaatcttctcaaaagaggcatcaatctaactcaaacaacaatgtaactttgagtgatgtcacagg |
4119601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 19 - 262
Target Start/End: Complemental strand, 4159388 - 4159145
Alignment:
| Q |
19 |
tagatccagaggtttgggatgcatcttttgagagtagcatgttgaggtgcatacacataggacttctttgtgtgcaagaacttccaaaagaaagaccaag |
118 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||| |
|
|
| T |
4159388 |
tagatcgagaggtttgggatgcatcttttgagagcagcatgttgaggtgcatacacataggacttctctgtgtgcaagaacttccaagagacagaccaaa |
4159289 |
T |
|
| Q |
119 |
tatatcaaccgtagttttgatgcttataagtgagatcacacatcttccacctcctggtaaagttgcatttgttcacaagcaaaattctcgaagtacagaa |
218 |
Q |
| |
|
||||||||| || ||||||||||| ||||||||||| ||||||||||| ||||| || |||||||||||||| |||||| ||||||| ||| |||| |
|
|
| T |
4159288 |
tatatcaacagttgttttgatgctcataagtgagattacacatcttcctcctccaggaaaagttgcatttgtccacaagaaaaattccaagagtggagaa |
4159189 |
T |
|
| Q |
219 |
tcttctcaacaaagtcatcgatctaactcaaacaacaatgtaac |
262 |
Q |
| |
|
||||||||| ||||||| | ||||||||||||||||| |||||| |
|
|
| T |
4159188 |
tcttctcaaaaaagtcaacaatctaactcaaacaacagtgtaac |
4159145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 262
Target Start/End: Complemental strand, 4150275 - 4150029
Alignment:
| Q |
19 |
tagatccagaggtttgggatgcatcttttgagagtagcatgttgaggtgcatacacataggacttctttgtgtgcaagaacttccaaaagaaagaccaag |
118 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||| |||||||| |||||||||||||| |||||||||||||| ||||||||||||| ||| ||||||| |
|
|
| T |
4150275 |
tagatccagaggtatgggatgcatgttttgagagcagcatgttaaggtgcatacacatcggacttctttgtgtacaagaacttccaagagacagaccaaa |
4150176 |
T |
|
| Q |
119 |
tatatcaaccgtagttttgatgcttataagtgagatcacacatcttccacctcctggtaaagttgcatttgttcacaagcaaaattc---tcgaagtaca |
215 |
Q |
| |
|
||||||||| || |||||||||||| ||||||| || ||||||||||| ||||| || | ||||||||||||||||||||||| ||| | | |||| |
|
|
| T |
4150175 |
tatatcaactgttgttttgatgcttgtaagtgaaattacacatcttcctcctccggggagagttgcatttgttcacaagcaaagttcaaagagtactaca |
4150076 |
T |
|
| Q |
216 |
gaatcttctcaacaaagtcatcgatctaactcaaacaacaatgtaac |
262 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
4150075 |
gaatcttctcaaaaaagtcatcaatctaactcaaacaacaatgtaac |
4150029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 2716621 - 2716566
Alignment:
| Q |
60 |
ttgaggtgcatacacataggacttctttgtgtgcaagaacttccaaaagaaagacc |
115 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||| || |||| || ||||| |
|
|
| T |
2716621 |
ttgagatgcatacacattggacttctttgtgtgcaagaaattgcaaaggagagacc |
2716566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 2723244 - 2723189
Alignment:
| Q |
60 |
ttgaggtgcatacacataggacttctttgtgtgcaagaacttccaaaagaaagacc |
115 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||| || |||| || ||||| |
|
|
| T |
2723244 |
ttgagatgcatacacattggacttctttgtgtgcaagaaattgcaaaggagagacc |
2723189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 2745075 - 2745020
Alignment:
| Q |
60 |
ttgaggtgcatacacataggacttctttgtgtgcaagaacttccaaaagaaagacc |
115 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||| || |||| || ||||| |
|
|
| T |
2745075 |
ttgagatgcatacacattggacttctttgtgtgcaagaaattgcaaaggagagacc |
2745020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University