View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7504_high_52 (Length: 276)
Name: NF7504_high_52
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7504_high_52 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 271
Target Start/End: Original strand, 34243048 - 34243299
Alignment:
| Q |
20 |
acatacagtacgttaataacttactacatagtaacttgttccttgaggggattaatttacataactagataatggaactaaaatactagctatgaatgaa |
119 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
34243048 |
acatatagtacgttaataacttactacatagtaacttgttccttgaggggattaatttatataactagataatggaactaaaatactagctatgaaagaa |
34243147 |
T |
|
| Q |
120 |
acatatacacatacaccgaatatgacactgcaacattgataataatttgaaaaaatgtatttattaaatgtaaacacacatctatcaatttcgaacgaca |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34243148 |
acatatacacatacaccgaatatgacactgcaacattgataataatttgaaaaaatatatttattaaatgtaaacacacatctatcaatttcgaacgaca |
34243247 |
T |
|
| Q |
220 |
cacatcgaaaactgaacacaccttcgttcagctgaattagaagtgatgatgt |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34243248 |
cacatcgaaaactgaacacaccttcgttcagctgaattagaagtgacgatgt |
34243299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 33700822 - 33700786
Alignment:
| Q |
161 |
ataatttgaaaaaatgtatttattaaatgtaaacaca |
197 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
33700822 |
ataatttgaaaaaatgtattaattgaatgtaaacaca |
33700786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University