View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7504_high_53 (Length: 266)

Name: NF7504_high_53
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7504_high_53
NF7504_high_53
[»] chr3 (1 HSPs)
chr3 (2-254)||(35936401-35936653)
[»] chr1 (2 HSPs)
chr1 (3-56)||(21629801-21629854)
chr1 (24-83)||(17008171-17008229)
[»] chr4 (3 HSPs)
chr4 (26-82)||(18096091-18096147)
chr4 (26-82)||(21829224-21829280)
chr4 (29-98)||(33717032-33717101)
[»] chr2 (1 HSPs)
chr2 (26-82)||(37853697-37853753)


Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 2 - 254
Target Start/End: Original strand, 35936401 - 35936653
Alignment:
Q  2 agtgttaaccaagttattgaatttaagtggttaatgagttccaccaaatgacgaatagttcgaaaaaatttgaatttgattcaaggatgaaacaattcag 101  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||| ||||||||      
T  35936401 agtgttaaccaagttattgagcttaagtggttaatgagttccaccaaatgacgaatcgttcgaaaaaatctaaatttgattcaaggatggaacaattcta 35936500  T
Q  102 agttaagttatacttatttcatagctgaatttcatattatcagactccttaaacaaaaacaattgtttaatgttcaaacattacttagtgatagagaaac 201  Q
    ||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  35936501 agtcaagttatacttatttcatagccgaatttcatattatcagactccttgaacaaaaacaattgtttaatgttcaaacattacttagtgatagagaaac 35936600  T
Q  202 ataagagtgtaatagtgaaaaagaatatgaaattttgaagtgagagtgatatt 254  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  35936601 ataagagtgtaacagtgaaaaagaatatgaaattttgaagtgagagtgatatt 35936653  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 21629801 - 21629854
Alignment:
Q  3 gtgttaaccaagttattgaatttaagtggttaatgagttccaccaaatgacgaa 56  Q
    ||||||||||||| ||| | || |||||||||||||||||||||||| ||||||    
T  21629801 gtgttaaccaagtgattaagttcaagtggttaatgagttccaccaaaggacgaa 21629854  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 17008171 - 17008229
Alignment:
Q  24 ttaagtggttaatgagttccaccaaatgacgaatagttcgaaaaaatttgaatttgattc 83  Q
    |||| |||||||||||||| ||||||| |||||| ||||  |||||||||||||||||||    
T  17008171 ttaaatggttaatgagttctaccaaat-acgaattgttcagaaaaatttgaatttgattc 17008229  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 18096091 - 18096147
Alignment:
Q  26 aagtggttaatgagttccaccaaatgacgaatagttcgaaaaaatttgaatttgatt 82  Q
    ||||||||||||| |||||| ||||||| ||| |||| ||| |||||||||||||||    
T  18096091 aagtggttaatgaattccactaaatgacaaattgttcaaaagaatttgaatttgatt 18096147  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 21829224 - 21829280
Alignment:
Q  26 aagtggttaatgagttccaccaaatgacgaatagttcgaaaaaatttgaatttgatt 82  Q
    |||||||||||||  | || |||| ||||||| ||||||||||||||||||||||||    
T  21829224 aagtggttaatgaccttcatcaaacgacgaatcgttcgaaaaaatttgaatttgatt 21829280  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 33717032 - 33717101
Alignment:
Q  29 tggttaatgagttccaccaaatgacgaatagttcgaaaaaatttgaatttgattcaaggatgaaacaatt 98  Q
    ||||||||||| ||||||||||||| |||| ||||| | ||||| | |||||||   |||||||||||||    
T  33717032 tggttaatgagctccaccaaatgactaataattcgagataatttaagtttgatttttggatgaaacaatt 33717101  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 37853697 - 37853753
Alignment:
Q  26 aagtggttaatgagttccaccaaatgacgaatagttcgaaaaaatttgaatttgatt 82  Q
    ||||||||||||| |||||| ||||||| ||| |||| ||| |||||||||||||||    
T  37853697 aagtggttaatgaattccactaaatgacaaattgttcaaaagaatttgaatttgatt 37853753  T

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