View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7504_high_59 (Length: 256)
Name: NF7504_high_59
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7504_high_59 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 21 - 255
Target Start/End: Original strand, 35936081 - 35936311
Alignment:
| Q |
21 |
cagccggctggttttaatttagtttcttcttgaatgcaatggattgtccttgtttccctgtttgtagaatcataacaagttatttaacaatttagcactt |
120 |
Q |
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| T |
35936081 |
cagccggctggttttaatttagtttcttcttgaatgcaatggattgtctttgtttccctgtttgtagaatcataacaagttatttaacaatttagcactt |
35936180 |
T |
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| Q |
121 |
tgtcattaactttgaaagttaatgatatactttttcctctaacttattgttgtggttgatgcagttgtactgtatcttcattctagtttctgagggaggt |
220 |
Q |
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| T |
35936181 |
tgtcattaactttgaaagttaatgatatactttttcctctaacttattgttgtggttgatgcagttgtactgtatcttcattctagtttctgagggaggt |
35936280 |
T |
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| Q |
221 |
aggtagtatatattctttatgtcaaaatattattt |
255 |
Q |
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| T |
35936281 |
aggtag----tattctttatgttaaaatcttattt |
35936311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 33 - 201
Target Start/End: Original strand, 35929439 - 35929611
Alignment:
| Q |
33 |
tttaatttagtttcttcttgaatgcaatggattgtccttgtttccctgtttgtagaatcataacaagttatttaacaatttagcactttgtcattaactt |
132 |
Q |
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| T |
35929439 |
tttaatatagtttctccttgaatgtaatggattgtccttgtttccctttttctagacacatatcaagttatttaacaatttagcactttgtgattaactt |
35929538 |
T |
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| Q |
133 |
tgaaagttaatg----atatactttttcctctaacttattgttgtggttgatgcagttgtactgtatcttcat |
201 |
Q |
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| T |
35929539 |
ttaaacttaatgataaatatattttgtcctctaacttattgttgccgtttatgcacttgtactgtatcttcat |
35929611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 62 - 185
Target Start/End: Original strand, 35922783 - 35922909
Alignment:
| Q |
62 |
gattgtccttgtttccctgtttgtagaatcat---aacaagttatttaacaatttagcactttgtcattaactttgaaagttaatgatatactttttcct |
158 |
Q |
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|||| ||||||||||||| ||| ||||||||| | |||| ||||||| ||||||| ||||||| ||||||||||||||||||||||||| || ||||| |
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| T |
35922783 |
gattttccttgtttccctttttctagaatcatggtatcaaggtatttaataatttagaactttgtgattaactttgaaagttaatgatatatttgttcct |
35922882 |
T |
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| Q |
159 |
ctaacttattgttgtggttgatgcagt |
185 |
Q |
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| T |
35922883 |
ctaacttattgttgtggtttatgcagt |
35922909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 61 - 144
Target Start/End: Original strand, 35916558 - 35916641
Alignment:
| Q |
61 |
ggattgtccttgtttccctgtttgtagaatcataacaagttatttaacaatttagcactttgtcattaactttgaaagttaatg |
144 |
Q |
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| T |
35916558 |
ggattgtcattgtttccctttttctagaatcatatcaagttatttaacgttttagcactttgtgattaactttgaaagttaatg |
35916641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 185
Target Start/End: Original strand, 35941606 - 35941769
Alignment:
| Q |
21 |
cagccggctggttttaatttagtttcttct---tgaatgcaatggattgtccttgtttccctgtttgtagaatcat--aacaagttatttaacaatttag |
115 |
Q |
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| T |
35941606 |
cagccggctgattttaaattagtttcttctccttgaatgtaattgtttt--cttgttttcctttttctagaatcatgtatcaagttatttaacaatttag |
35941703 |
T |
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| Q |
116 |
cactttgtcattaactttgaaagttaatgatatactttttcctctaacttattgttgtggttgatgcagt |
185 |
Q |
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| T |
35941704 |
cactttgtaattaacttt----gttaattatatattttttcctctaacttatttttatgattgatgcagt |
35941769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 58 - 173
Target Start/End: Original strand, 35912131 - 35912247
Alignment:
| Q |
58 |
aatggattgtccttgtttccctgtttgtagaatcat--aacaagttatttaacaatttagcactttgtcattaactttgaaagttaatgatatacttttt |
155 |
Q |
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| T |
35912131 |
aatggattgttcttgtttccgtttttctagaatcatgtatcaagttatttaacattttagtactatgtgattaactttgaaagttaatg-gatgtttgtt |
35912229 |
T |
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| Q |
156 |
cctctaacttattgttgt |
173 |
Q |
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| T |
35912230 |
cctctaacttattgttgt |
35912247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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