View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7504_high_61 (Length: 253)

Name: NF7504_high_61
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7504_high_61
NF7504_high_61
[»] scaffold0565 (2 HSPs)
scaffold0565 (109-205)||(5752-5850)
scaffold0565 (21-66)||(5644-5689)
[»] chr8 (1 HSPs)
chr8 (223-253)||(17314966-17314996)
[»] chr1 (1 HSPs)
chr1 (223-253)||(25185296-25185326)
[»] chr5 (1 HSPs)
chr5 (225-253)||(12912290-12912318)


Alignment Details
Target: scaffold0565 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 109 - 205
Target Start/End: Original strand, 5752 - 5850
Alignment:
Q  109 atgattcaacacattgtagccattatagtctagtagtac--taattaaccatcaaatatttactactatcttatactccatccgtcccatattataagc 205  Q
    |||||||||||||||||||||||||||||||| ||||||  |||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5752 atgattcaacacattgtagccattatagtctaatagtacactaatcaactatcaaatatttactactatcttatactccatccgttccatattataagc 5850  T

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Target: scaffold0565; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 5644 - 5689
Alignment:
Q  21 taaatgaaatgacttataaatttaaagaaaatgataatcgatattg 66  Q
    ||||||| |||| |||||||||||||||||||||||||| ||||||    
T  5644 taaatgagatgatttataaatttaaagaaaatgataatcaatattg 5689  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 253
Target Start/End: Complemental strand, 17314996 - 17314966
Alignment:
Q  223 tcatacttattaagaaaactaaaacatagta 253  Q
    |||||||||||||||||||||||||||||||    
T  17314996 tcatacttattaagaaaactaaaacatagta 17314966  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 253
Target Start/End: Original strand, 25185296 - 25185326
Alignment:
Q  223 tcatacttattaagaaaactaaaacatagta 253  Q
    |||||||||||||||||||||||||||||||    
T  25185296 tcatacttattaagaaaactaaaacatagta 25185326  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 225 - 253
Target Start/End: Original strand, 12912290 - 12912318
Alignment:
Q  225 atacttattaagaaaactaaaacatagta 253  Q
    |||||||||||||||||||||||||||||    
T  12912290 atacttattaagaaaactaaaacatagta 12912318  T

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