View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7504_high_62 (Length: 250)
Name: NF7504_high_62
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7504_high_62 |
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| [»] chr8 (8 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 4142893 - 4142656
Alignment:
| Q |
13 |
aatatcagactttggtttagctagaattgttaaatttggagaagatgatgaagctaacacaaaaagggttgttggaacttagtaagtaatcatatctcat |
112 |
Q |
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| T |
4142893 |
aatatcagactttggtttagctagaattgttaaatttggagaagatgatgaagctaacacaaaaagggttgttggaacttagtaagtaatcatatctcat |
4142794 |
T |
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| Q |
113 |
cggacattacaatgttggaattaatattacaaataaattgtttcattattatttgtcttattataacatgggtttgtctaacatatatcctaaatgcagt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
4142793 |
cggacattacaatgttggaattaatattacaaataaattgtttcattattatttgtcttattataatatgggtttgtctaatatatatcctaaatgcagt |
4142694 |
T |
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| Q |
213 |
ggttatatgccaccggaatatgcaatggaggggctttt |
250 |
Q |
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| T |
4142693 |
ggttatatgccacctgaatatgcaatggaggggctttt |
4142656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 4150905 - 4150674
Alignment:
| Q |
13 |
aatatcagactttggtttagctagaattgttaaatttggagaagatgatgaagctaacacaaaaagggttgttggaacttagtaagtaatcatatctcat |
112 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
4150905 |
aatatcagacttcggtttagcaagaattgttaaatttggagaagatgatgaagctaacacaaaaagggttgttggaacttagtaagtagtactatctcat |
4150806 |
T |
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| Q |
113 |
cggacattacaatgttggaattaatattacaaataaattgtttcattattatttgtcttattataacatgggtttgt-ctaacatatatcctaaatgcag |
211 |
Q |
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| T |
4150805 |
ttgatattataatgttggaattagtgttacaaatgagtggtttaatt-ttattt------tttttacttggggttatagtaacatatgttctaaatgcag |
4150713 |
T |
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| Q |
212 |
tggttatatgccaccggaatatgcaatggaggggctttt |
250 |
Q |
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| T |
4150712 |
tggttatatgccgcctgaatatgcaatggaggggctttt |
4150674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 135
Target Start/End: Complemental strand, 4120456 - 4120335
Alignment:
| Q |
14 |
atatcagactttggtttagctagaattgttaaatttggagaagatgatgaagctaacacaaaaagggttgttggaacttagtaagtaatcatatctcatc |
113 |
Q |
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| T |
4120456 |
atatcagactttgggttagctagaattgttaaaggtggagaagatgatgaagctaacacgaaaagggttgtcggaacttagtaagtaatcctatctcatt |
4120357 |
T |
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| Q |
114 |
ggacattacaatgttggaatta |
135 |
Q |
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| T |
4120356 |
gaacattatattgttgggatta |
4120335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 4130541 - 4130454
Alignment:
| Q |
13 |
aatatcagactttggtttagctagaattgttaaatttggagaagatgatgaagctaacacaaaaagggttgttggaacttagtaagta |
100 |
Q |
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| T |
4130541 |
aatatcagactttggtttagctagaattgttaaaggtggagaaggtgatgaagctaacacaaaaagggttgttggaacttagtaagta |
4130454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 4159922 - 4159837
Alignment:
| Q |
13 |
aatatcagactttggtttagctagaattgttaaatttggagaagatgatgaagctaacacaaaaagggttgttggaacttagtaag |
98 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| |||||||||||||||||||||| |
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| T |
4159922 |
aatatcagactttggtttagctagaattgttaaaggaggagaagatgatgaaacaaacacaaatagggttgttggaacttagtaag |
4159837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 203 - 250
Target Start/End: Complemental strand, 4120277 - 4120230
Alignment:
| Q |
203 |
taaatgcagtggttatatgccaccggaatatgcaatggaggggctttt |
250 |
Q |
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| T |
4120277 |
taaatgcagtggttatatgccgccagaatatgcaatggaggggctttt |
4120230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 4159723 - 4159675
Alignment:
| Q |
202 |
ctaaatgcagtggttatatgccaccggaatatgcaatggaggggctttt |
250 |
Q |
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| T |
4159723 |
ctaaatgcagtggttatatgccgcctgaatatgcaatggaaggactttt |
4159675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 4130359 - 4130311
Alignment:
| Q |
202 |
ctaaatgcagtggttatatgccaccggaatatgcaatggaggggctttt |
250 |
Q |
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||||||| |||||||||||||| || ||||||||||||| ||| ||||| |
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| T |
4130359 |
ctaaatgtagtggttatatgccgcctgaatatgcaatggggggactttt |
4130311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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