View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7504_high_63 (Length: 248)
Name: NF7504_high_63
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7504_high_63 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 20031861 - 20032091
Alignment:
| Q |
1 |
acttacgccagaatataaactcaaatatgtcaatccaaacaagccccgattgaagcagatttcaataatgcaaaaactatgagaacctataaaacaccga |
100 |
Q |
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| T |
20031861 |
acttacgccagaatataaactcaaatatgtcaatccaaacaagccccaattgaagcagatttcaataatgcaaaaactatgagaacctataaaacaccga |
20031960 |
T |
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| Q |
101 |
cacaaacacttgacgcgactctaacaagttgacacaggtaataatttatgaaaatgaaattgattaaacctaaattaacggaaaacaaataaacctaaat |
200 |
Q |
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| T |
20031961 |
cacacacacttgacgcgactctaacaagttgacacaggtaataatttatgaaaatgaaattgattaaacctaaattaacggaaaacaaataaacttaaat |
20032060 |
T |
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| Q |
201 |
ttcttacagttgcattttcgaaacacgaaaa |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
20032061 |
ttcttacagttgcattttcgaaacacgaaaa |
20032091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 43
Target Start/End: Original strand, 45083218 - 45083246
Alignment:
| Q |
15 |
ataaactcaaatatgtcaatccaaacaag |
43 |
Q |
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| T |
45083218 |
ataaactcaaatatgtcaatccaaacaag |
45083246 |
T |
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