View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7504_high_64 (Length: 248)
Name: NF7504_high_64
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7504_high_64 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 5086669 - 5086904
Alignment:
| Q |
1 |
tgtaatgaaattgatgttaagaggctctgaaacgtccaacaagacgtctgaaaaatcacgactaaagtcaatgtgtgcagctatactgtggttttgatgg |
100 |
Q |
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| T |
5086669 |
tgtaatgaaattgatgttaagaggctctgaaacgtccaacaagacgtctgaaaaatcacgactaaagtcgatgtgtgcagctatactgtggttttgatgg |
5086768 |
T |
|
| Q |
101 |
agcttctgattagattagcagcatttaagattaaacttaggtttattctcatactttcagcatcggaaactcatcaggttacgaggctactgcgttgaag |
200 |
Q |
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| T |
5086769 |
agcttctgattagattagccgcatttaagattaaacttaggtttattctcatactttcagcatcag-aactcatcaggttatgaggctactgcgttgaag |
5086867 |
T |
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| Q |
201 |
aaggggaaagaatatcgttgtaagagtacatgggata |
237 |
Q |
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| T |
5086868 |
aaggggaaagaatatcgttgtaagagtacatgggata |
5086904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 151
Target Start/End: Complemental strand, 5098216 - 5098104
Alignment:
| Q |
39 |
acaagacgtctgaaaaatcacgactaaagtcaatgtgtgcagctatactgtggttttgatggagcttctgattagattagcagcatttaagattaaactt |
138 |
Q |
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||||||||||||||||||||| ||||||||| |||||| ||||| | |||||| ||||| |||||||| | | ||||||| ||||||||||||||| || |
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| T |
5098216 |
acaagacgtctgaaaaatcacaactaaagtcgatgtgtatagctacattgtggtgttgatagagcttctaactggattagcggcatttaagattaaagtt |
5098117 |
T |
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| Q |
139 |
aggtttattctca |
151 |
Q |
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| T |
5098116 |
aggtttattctca |
5098104 |
T |
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